3 Summary: Empirical analysis of digital gene expression data in R
8 Group: Applications/Engineering
9 Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
10 # Source0-md5: fdf9457b51e457743bc9171b8026afc0
11 URL: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
12 BuildRequires: R-limma
14 BuildRequires: texlive-latex
17 BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
20 Differential expression analysis of RNA-seq and digital gene
21 expression profiles with biological replication. Uses empirical Bayes
22 estimation and exact tests based on the negative binomial
23 distribution. Also useful for differential signal analysis with other
24 types of genome-scale count data.
27 %setup -q -c -n %{packname}
32 rm -rf $RPM_BUILD_ROOT
33 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
35 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
38 rm -rf $RPM_BUILD_ROOT
41 %defattr(644,root,root,755)
42 %dir %{_libdir}/R/library/%{packname}/
43 %doc %{_libdir}/R/library/%{packname}/CITATION
44 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
45 %doc %{_libdir}/R/library/%{packname}/NEWS.Rd
46 %doc %{_libdir}/R/library/%{packname}/html
47 %doc %{_libdir}/R/library/%{packname}/doc
48 %{_libdir}/R/library/%{packname}/INDEX
49 %{_libdir}/R/library/%{packname}/Meta/
50 %{_libdir}/R/library/%{packname}/NAMESPACE
51 %{_libdir}/R/library/%{packname}/R/
52 %{_libdir}/R/library/%{packname}/help/
53 %{_libdir}/R/library/%{packname}/data
54 %dir %{_libdir}/R/library/%{packname}/libs
55 %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/edgeR.so