- new auto/th/R-edgeR-3.2.3-1
authorJan Rękorajski <baggins@pld-linux.org>
Fri, 10 May 2013 10:33:11 +0000 (12:33 +0200)
committerJan Rękorajski <baggins@pld-linux.org>
Fri, 10 May 2013 10:33:11 +0000 (12:33 +0200)
R-edgeR.spec [new file with mode: 0644]

diff --git a/R-edgeR.spec b/R-edgeR.spec
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+%define                packname        edgeR
+
+Summary:       Empirical analysis of digital gene expression data in R
+Name:          R-%{packname}
+Version:       3.2.3
+Release:       1
+License:       LGPL
+Group:         Applications/Engineering
+Source0:       http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: fdf9457b51e457743bc9171b8026afc0
+URL:           http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+BuildRequires: R-limma
+BuildRequires: R
+BuildRequires: texlive-latex
+Requires:      R-limma
+Requires:      R
+BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Differential expression analysis of RNA-seq and digital gene
+expression profiles with biological replication. Uses empirical Bayes
+estimation and exact tests based on the negative binomial
+distribution. Also useful for differential signal analysis with other
+types of genome-scale count data.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/CITATION
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS.Rd
+%doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/doc
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/data
+%dir %{_libdir}/R/library/%{packname}/libs
+%attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/edgeR.so
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