R-affy.spec

   1 %define         packname        affy
   2
   3 Summary:        Methods for Affymetrix Oligonucleotide Arrays
   4 Name:           R-%{packname}
   5 Version:        1.40.0
   6 Release:        3
   7 License:        LGPL v2+
   8 Group:          Applications/Engineering
   9 Source0:        http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  b58ebcb0117b685130425e8840088845
  11 Patch0:         bogus-deps.patch
  12 URL:            http://bioconductor.org/packages/release/bioc/html/affy.html
  13 BuildRequires:  R
  14 BuildRequires:  R-Biobase
  15 BuildRequires:  R-BiocGenerics
  16 BuildRequires:  R-affyio
  17 BuildRequires:  R-preprocessCore-devel
  18 BuildRequires:  R-tkWidgets
  19 BuildRequires:  texlive-latex
  20 BuildRequires:  zlib-devel
  21 Requires:       R
  22 Requires:       R-Biobase
  23 Requires:       R-BiocGenerics
  24 Requires:       R-affyio
  25 Requires:       R-preprocessCore
  26 Suggests:       R-tkWidgets
  27 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  28
  29 %description
  30 The package contains functions for exploratory oligonucleotide array
  31 analysis.
  32
  33 The dependancy to tkWidgets only concerns few convenience functions.
  34 'affy' is fully functional without it.
  35
  36 %prep
  37 %setup -q -c -n %{packname}
  38 %patch0 -p1
  39
  40 %build
  41
  42 %install
  43 rm -rf $RPM_BUILD_ROOT
  44 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  45
  46 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  47
  48 %clean
  49 rm -rf $RPM_BUILD_ROOT
  50
  51 %files
  52 %defattr(644,root,root,755)
  53 %dir %{_libdir}/R/library/%{packname}
  54 %doc %{_libdir}/R/library/%{packname}/doc
  55 %doc %{_libdir}/R/library/%{packname}/html
  56 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  57 %doc %{_libdir}/R/library/%{packname}/NEWS
  58 %doc %{_libdir}/R/library/%{packname}/CITATION
  59 %{_libdir}/R/library/%{packname}/INDEX
  60 %{_libdir}/R/library/%{packname}/NAMESPACE
  61 %{_libdir}/R/library/%{packname}/Meta
  62 %{_libdir}/R/library/%{packname}/R
  63 %{_libdir}/R/library/%{packname}/help
  64 %{_libdir}/R/library/%{packname}/data
  65 %{_libdir}/R/library/%{packname}/libs
  66 %{_libdir}/R/library/%{packname}/demo
  67 %{_libdir}/R/library/%{packname}/tests