- new

diff --git a/R-gcrma.spec b/R-gcrma.spec
new file mode 100644 (file)
index 0000000..cd077ca
--- /dev/null
+++ b/R-gcrma.spec
@@ -0,0 +1,53 @@
+%define                packname        gcrma
+
+Summary:       Background Adjustment Using Sequence Information
+Name:          R-%{packname}
+Version:       2.30.0
+Release:       1
+License:       LGPL
+Group:         Applications/Engineering
+Source0:       http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: 13a24a8182b435d538fc0abb67e47ebd
+Patch0:                bogus-deps.patch
+URL:           http://www.bioconductor.org/packages/release/bioc/html/gcrma.html
+BuildRequires: R-Biobase >= 2.5.5
+BuildRequires: R
+BuildRequires: texlive-latex
+BuildRequires: texinfo
+Requires:      R-Biobase >= 2.5.5
+Requires:      R
+Requires:      texinfo
+BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Background adjustment using sequence information.
+
+%prep
+%setup -q -c -n %{packname}
+%patch0 -p1
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/html
+%{_libdir}/R/library/%{packname}/Meta
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/R
+%{_libdir}/R/library/%{packname}/help
+%{_libdir}/R/library/%{packname}/data
+%dir %{_libdir}/R/library/gcrma/libs
+%attr(755,root,root) %{_libdir}/R/library/gcrma/libs/gcrma.so

diff --git a/bogus-deps.patch b/bogus-deps.patch
new file mode 100644 (file)
index 0000000..78bfb24
--- /dev/null
+++ b/bogus-deps.patch
@@ -0,0 +1,22 @@
+--- gcrma/gcrma/DESCRIPTION~   2012-10-02 04:44:17.000000000 +0200
++++ gcrma/gcrma/DESCRIPTION    2012-10-17 19:26:58.529249639 +0200
+@@ -11,7 +11,7 @@
+ Depends: R (>= 2.6.0), affy (>= 1.23.2), graphics, methods, stats,
+         utils
+ Imports: Biobase, affy (>= 1.23.2), affyio (>= 1.13.3), IRanges,
+-        Biostrings (>= 2.11.32), splines, BiocInstaller
++        Biostrings (>= 2.11.32), splines
+ Suggests: affydata, tools, splines, hgu95av2cdf, hgu95av2probe
+ biocViews: Microarray, OneChannel, Preprocessing
+ Packaged: 2012-10-02 02:44:17 UTC; biocbuild
+--- gcrma/gcrma/NAMESPACE~     2012-10-02 00:58:42.000000000 +0200
++++ gcrma/gcrma/NAMESPACE      2012-10-17 19:27:09.325915925 +0200
+@@ -12,8 +12,6 @@
+ 
+ importFrom(Biobase, testBioCConnection)
+ 
+-importFrom(BiocInstaller, biocinstallRepos)
+-
+ importFrom(IRanges, subseq, "subseq<-")
+ importClassesFrom(Biostrings, "DNAStringSet")
+ importFrom(Biostrings, DNAStringSet, complement)