R-GenomicFeatures.spec

   1 %define         packname        GenomicFeatures
   2
   3 Summary:        Tools for making and manipulating transcript centric annotations
   4 Name:           R-%{packname}
   5 Version:        1.12.1
   6 Release:        1
   7 License:        Artistic 2.0
   8 Group:          Applications/Math
   9 Source0:        http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  b9cfb7e3d3c32092834a9fbd5a4de212
  11 URL:            http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
  12 BuildRequires:  R
  13 BuildRequires:  R-AnnotationDbi >= 1.19.36
  14 BuildRequires:  R-BiocGenerics
  15 BuildRequires:  R-GenomicRanges >= 1.11.11
  16 BuildRequires:  R-IRanges-devel >= 1.17.13
  17 BuildRequires:  R-Biostrings
  18 BuildRequires:  R-rtracklayer
  19 BuildRequires:  R-biomaRt
  20 BuildRequires:  R-cran-RCurl
  21 BuildRequires:  texlive-latex
  22 Requires:       R
  23 Requires:       R-AnnotationDbi >= 1.19.36
  24 Requires:       R-BiocGenerics
  25 Requires:       R-GenomicRanges >= 1.11.11
  26 Requires:       R-IRanges >= 1.17.13
  27 Requires:       R-Biostrings
  28 Requires:       R-rtracklayer
  29 Requires:       R-biomaRt
  30 Requires:       R-cran-RCurl
  31 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  32
  33 %description
  34 A set of tools and methods for making and manipulating transcript
  35 centric annotations. With these tools the user can easily download
  36 the genomic locations of the transcripts, exons and cds of a given
  37 organism, from either the UCSC Genome Browser or a BioMart database
  38 (more sources will be supported in the future). This information is
  39 then stored in a local database that keeps track of the relationship
  40 between transcripts, exons, cds and genes. Flexible methods are
  41 provided for extracting the desired features in a convenient format.
  42
  43 %prep
  44 %setup -q -c -n %{packname}
  45
  46 %build
  47
  48 %install
  49 rm -rf $RPM_BUILD_ROOT
  50 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  51
  52 %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
  53
  54 %clean
  55 rm -rf $RPM_BUILD_ROOT
  56
  57 %files
  58 %defattr(644,root,root,755)
  59 %dir %{_libdir}/R/library/%{packname}/
  60 %doc %{_libdir}/R/library/%{packname}/doc/
  61 %doc %{_libdir}/R/library/%{packname}/html/
  62 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  63 %doc %{_libdir}/R/library/%{packname}/NEWS
  64 %{_libdir}/R/library/%{packname}/INDEX
  65 %{_libdir}/R/library/%{packname}/NAMESPACE
  66 %{_libdir}/R/library/%{packname}/Meta/
  67 %{_libdir}/R/library/%{packname}/R/
  68 %{_libdir}/R/library/%{packname}/extdata/
  69 %{_libdir}/R/library/%{packname}/help/
  70 %{_libdir}/R/library/%{packname}/unitTests/
  71 %{_libdir}/R/library/%{packname}/script
  72 %{_libdir}/R/library/%{packname}/txdb-template