ncbi-blast+.spec

   1 Summary:        NCBI BLAST+ finds regions of similarity between biological sequences
   2 Name:           ncbi-blast+
   3 Version:        2.2.29
   4 Release:        1
   5 License:        Public Domain and MIT
   6 Group:          Applications/Science
   7 Source0:        ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-%{version}+-src.tar.gz
   8 # Source0-md5:  1290360b24448dd79840a6800482b597
   9 Patch0:         %{name}-configure.patch
  10 Patch1:         %{name}-libdeps.patch
  11 URL:            http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
  12 BuildRequires:  boost-devel
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  14 BuildRequires:  curl-devel
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  28 #BuildRequires: libgssapi_krb5
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  57 BuildRequires:  xorg-lib-libXpm-devel
  58 BuildRequires:  xorg-lib-libXt-devel
  59 BuildRequires:  zlib-devel
  60 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  61
  62 %description
  63 The NCBI Basic Local Alignment Search Tool (BLAST) finds regions of
  64 local similarity between sequences. The program compares nucleotide or
  65 protein sequences to sequence databases and calculates the statistical
  66 significance of matches. BLAST can be used to infer functional and
  67 evolutionary relationships between sequences as well as help identify
  68 members of gene families.
  69
  70 %prep
  71 %setup -q -n ncbi-blast-%{version}+-src
  72 %patch0 -p1
  73 %patch1 -p1
  74
  75 %build
  76 export CFLAGS="%{rpmcflags}"
  77 export CXXFLAGS="%{rpmcxxflags}"
  78
  79 cd c++
  80 %configure \
  81         --with-dll \
  82         --with-mt \
  83         --without-autodep \
  84         --without-makefile-auto-update \
  85         --with-flat-makefile \
  86         --without-caution \
  87         --without-dbapi \
  88         --without-lzo \
  89         --with-runpath=%{_libdir}/ncbi-blast+ \
  90         --with-build-root=BUILD \
  91         --without-strip \
  92         --with-symbols
  93
  94 cd BUILD/build
  95 %{__make} -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/"
  96
  97 %install
  98 rm -rf $RPM_BUILD_ROOT
  99 install -d $RPM_BUILD_ROOT/{%{_bindir},%{_libdir}/ncbi-blast+}
 100
 101 install -p c++/BUILD/lib/*.so $RPM_BUILD_ROOT/%{_libdir}/ncbi-blast+
 102
 103 cd c++/BUILD/bin
 104 install -p blastp blastn blastx tblastn tblastx psiblast rpsblast \
 105         rpstblastn blast_formatter deltablast makembindex segmasker \
 106         dustmasker windowmasker makeblastdb makeprofiledb blastdbcmd \
 107         blastdb_aliastool convert2blastmask blastdbcheck legacy_blast.pl \
 108         blastdbcp gene_info_reader seedtop seqdb_demo seqdb_perf datatool \
 109         project_tree_builder update_blastdb.pl $RPM_BUILD_ROOT/%{_bindir}
 110
 111 %clean
 112 rm -rf $RPM_BUILD_ROOT
 113
 114 %files
 115 %defattr(644,root,root,755)
 116 %doc c++/scripts/projects/blast/ChangeLog
 117 %doc c++/scripts/projects/blast/README
 118 %doc c++/scripts/projects/blast/LICENSE
 119 %attr(755,root,root) %{_bindir}/*
 120 %dir %{_libdir}/ncbi-blast+
 121 %attr(755,root,root) %{_libdir}/ncbi-blast+/*.so