- new

diff --git a/R-makecdfenv.spec b/R-makecdfenv.spec
new file mode 100644 (file)
index 0000000..8af7021
--- /dev/null
+++ b/R-makecdfenv.spec
@@ -0,0 +1,59 @@
+%define                packname        makecdfenv
+
+Summary:       CDF Environment Maker
+Name:          R-%{packname}
+Version:       1.36.0
+Release:       1
+License:       LGPL v2+
+Group:         Applications/Engineering
+Source0:       http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: c24082bfa9e64e8934b4e7c5fec60af3
+Patch0:                bogus-deps.patch
+URL:           http://bioconductor.org/packages/release/bioc/html/%{packname}.html
+BuildRequires: R
+BuildRequires: R-Biobase
+BuildRequires: R-affy
+BuildRequires: texlive-latex
+BuildRequires: zlib-devel
+Requires:      R
+Requires:      R-Biobase
+Requires:      R-affy
+BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+This package has two functions. One reads a Affymetrix chip
+description file (CDF) and creates a hash table environment containing
+the location/probe set membership mapping. The other creates a package
+that automatically loads that environment.
+
+%prep
+%setup -q -c -n %{packname}
+%patch0 -p1
+
+%build
+R CMD build %{packname}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/Code
+%{_libdir}/R/library/%{packname}/Meta
+%{_libdir}/R/library/%{packname}/extdata
+%{_libdir}/R/library/%{packname}/R
+%{_libdir}/R/library/%{packname}/help
+%dir %{_libdir}/R/library/%{packname}/libs
+%attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/makecdfenv.so

diff --git a/bogus-deps.patch b/bogus-deps.patch
new file mode 100644 (file)
index 0000000..833e2fb
--- /dev/null
+++ b/bogus-deps.patch
@@ -0,0 +1,22 @@
+--- makecdfenv/makecdfenv/DESCRIPTION~ 2012-10-02 04:43:08.000000000 +0200
++++ makecdfenv/makecdfenv/DESCRIPTION  2012-10-18 13:21:30.057046618 +0200
+@@ -8,7 +8,7 @@
+         <bmb@bmbolstad.com>
+ Maintainer: James W. MacDonald <jmacdon@med.umich.edu>
+ Depends: R (>= 2.6.0), methods
+-Imports: Biobase, affy, methods, stats, utils, zlibbioc
++Imports: Biobase, affy, methods, stats, utils,
+ Description: This package has two functions. One reads a Affymetrix
+         chip description file (CDF) and creates a hash table
+         environment containing the location/probe set membership
+--- makecdfenv/makecdfenv/NAMESPACE~   2012-10-02 01:28:55.000000000 +0200
++++ makecdfenv/makecdfenv/NAMESPACE    2012-10-18 13:21:35.800379751 +0200
+@@ -2,8 +2,6 @@
+ 
+ import(methods)
+ 
+-import(zlibbioc)
+-
+ importFrom(affy, cleancdfname)
+ 
+ importFrom(Biobase, createPackage, multiassign)