From f6d11a62bc0353125ecbcdbc4a027a5a3f8af141 Mon Sep 17 00:00:00 2001
From: =?utf8?q?Jan=20R=C4=99korajski?= <baggins@pld-linux.org>
Date: Thu, 18 Oct 2012 13:24:15 +0200
Subject: [PATCH] - new

---
 R-makecdfenv.spec | 59 +++++++++++++++++++++++++++++++++++++++++++++++
 bogus-deps.patch  | 22 ++++++++++++++++++
 2 files changed, 81 insertions(+)
 create mode 100644 R-makecdfenv.spec
 create mode 100644 bogus-deps.patch

diff --git a/R-makecdfenv.spec b/R-makecdfenv.spec
new file mode 100644
index 0000000..8af7021
--- /dev/null
+++ b/R-makecdfenv.spec
@@ -0,0 +1,59 @@
+%define		packname	makecdfenv
+
+Summary:	CDF Environment Maker
+Name:		R-%{packname}
+Version:	1.36.0
+Release:	1
+License:	LGPL v2+
+Group:		Applications/Engineering
+Source0:	http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5:	c24082bfa9e64e8934b4e7c5fec60af3
+Patch0:		bogus-deps.patch
+URL:		http://bioconductor.org/packages/release/bioc/html/%{packname}.html
+BuildRequires:	R
+BuildRequires:	R-Biobase
+BuildRequires:	R-affy
+BuildRequires:	texlive-latex
+BuildRequires:	zlib-devel
+Requires:	R
+Requires:	R-Biobase
+Requires:	R-affy
+BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+This package has two functions. One reads a Affymetrix chip
+description file (CDF) and creates a hash table environment containing
+the location/probe set membership mapping. The other creates a package
+that automatically loads that environment.
+
+%prep
+%setup -q -c -n %{packname}
+%patch0 -p1
+
+%build
+R CMD build %{packname}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/Code
+%{_libdir}/R/library/%{packname}/Meta
+%{_libdir}/R/library/%{packname}/extdata
+%{_libdir}/R/library/%{packname}/R
+%{_libdir}/R/library/%{packname}/help
+%dir %{_libdir}/R/library/%{packname}/libs
+%attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/makecdfenv.so
diff --git a/bogus-deps.patch b/bogus-deps.patch
new file mode 100644
index 0000000..833e2fb
--- /dev/null
+++ b/bogus-deps.patch
@@ -0,0 +1,22 @@
+--- makecdfenv/makecdfenv/DESCRIPTION~	2012-10-02 04:43:08.000000000 +0200
++++ makecdfenv/makecdfenv/DESCRIPTION	2012-10-18 13:21:30.057046618 +0200
+@@ -8,7 +8,7 @@
+         <bmb@bmbolstad.com>
+ Maintainer: James W. MacDonald <jmacdon@med.umich.edu>
+ Depends: R (>= 2.6.0), methods
+-Imports: Biobase, affy, methods, stats, utils, zlibbioc
++Imports: Biobase, affy, methods, stats, utils,
+ Description: This package has two functions. One reads a Affymetrix
+         chip description file (CDF) and creates a hash table
+         environment containing the location/probe set membership
+--- makecdfenv/makecdfenv/NAMESPACE~	2012-10-02 01:28:55.000000000 +0200
++++ makecdfenv/makecdfenv/NAMESPACE	2012-10-18 13:21:35.800379751 +0200
+@@ -2,8 +2,6 @@
+ 
+ import(methods)
+ 
+-import(zlibbioc)
+-
+ importFrom(affy, cleancdfname)
+ 
+ importFrom(Biobase, createPackage, multiassign)
-- 
2.43.0