R-cummeRbund.spec

   1 %define         packname        cummeRbund
   2
   3 Summary:        Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data
   4 Name:           R-%{packname}
   5 Version:        2.4.0
   6 Release:        1
   7 License:        LGPL v2+
   8 Group:          Applications/Engineering
   9 Source0:        http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  f6236638b8305fd6ac7c58bd5f9bb89d
  11 URL:            http://bioconductor.org/packages/release/bioc/html/cummeRbund.html
  12 BuildRequires:  R
  13 BuildRequires:  R-BiocGenerics >= 0.3.2
  14 BuildRequires:  R-Gviz
  15 BuildRequires:  R-cran-fastcluster
  16 BuildRequires:  R-cran-ggplot2
  17 BuildRequires:  R-cran-plyr
  18 BuildRequires:  R-cran-reshape2
  19 BuildRequires:  R-cran-RSQLite
  20 BuildRequires:  R-rtracklayer
  21 BuildRequires:  texlive-latex
  22 Requires:       R
  23 Requires:       R-BiocGenerics >= 0.3.2
  24 Requires:       R-Gviz
  25 Requires:       R-cran-fastcluster
  26 Requires:       R-cran-ggplot2
  27 Requires:       R-cran-plyr
  28 Requires:       R-cran-reshape2
  29 Requires:       R-cran-RSQLite
  30 Requires:       R-rtracklayer
  31 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  32
  33 %description
  34 Allows for persistent storage, access, exploration, and manipulation
  35 of Cufflinks high-throughput sequencing data. In addition, provides
  36 numerous plotting functions for commonly used visualizations.
  37
  38 %prep
  39 %setup -q -c -n %{packname}
  40
  41 %build
  42
  43 %install
  44 rm -rf $RPM_BUILD_ROOT
  45 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  46
  47 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  48
  49 %clean
  50 rm -rf $RPM_BUILD_ROOT
  51
  52 %files
  53 %defattr(644,root,root,755)
  54 %dir %{_libdir}/R/library/%{packname}
  55 %doc %{_libdir}/R/library/%{packname}/doc
  56 %doc %{_libdir}/R/library/%{packname}/html
  57 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  58 %doc %{_libdir}/R/library/%{packname}/NEWS
  59 %{_libdir}/R/library/%{packname}/INDEX
  60 %{_libdir}/R/library/%{packname}/NAMESPACE
  61 %{_libdir}/R/library/%{packname}/Meta
  62 %{_libdir}/R/library/%{packname}/R
  63 %{_libdir}/R/library/%{packname}/help
  64 %{_libdir}/R/library/%{packname}/data
  65 %{_libdir}/R/library/%{packname}/extdata
  66 %{_libdir}/R/library/%{packname}/reports