projects / packages / R-cummeRbund.git / blame
| Commit | Line | Data |
|---|---|---|
| b8659c1c JR |
1 | %define packname cummeRbund |
| 2 | ||
| 3 | Summary: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data | |
| 4 | Name: R-%{packname} | |
| 5 | Version: 2.4.0 | |
| 6 | Release: 1 | |
| 7 | License: LGPL v2+ | |
| 8 | Group: Applications/Engineering | |
| 9 | Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| 10 | # Source0-md5: f6236638b8305fd6ac7c58bd5f9bb89d | |
| 11 | URL: http://bioconductor.org/packages/release/bioc/html/cummeRbund.html | |
| 12 | BuildRequires: R | |
| 13 | BuildRequires: R-BiocGenerics >= 0.3.2 | |
| 14 | BuildRequires: R-Gviz | |
| 15 | BuildRequires: R-cran-fastcluster | |
| 16 | BuildRequires: R-cran-ggplot2 | |
| 17 | BuildRequires: R-cran-plyr | |
| 18 | BuildRequires: R-cran-reshape2 | |
| 19 | BuildRequires: R-cran-RSQLite | |
| 20 | BuildRequires: R-rtracklayer | |
| 21 | BuildRequires: texlive-latex | |
| 22 | Requires: R | |
| 23 | Requires: R-BiocGenerics >= 0.3.2 | |
| 24 | Requires: R-Gviz | |
| 25 | Requires: R-cran-fastcluster | |
| 26 | Requires: R-cran-ggplot2 | |
| 27 | Requires: R-cran-plyr | |
| 28 | Requires: R-cran-reshape2 | |
| 29 | Requires: R-cran-RSQLite | |
| 30 | Requires: R-rtracklayer | |
| 31 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 32 | ||
| 33 | %description | |
| 34 | Allows for persistent storage, access, exploration, and manipulation | |
| 35 | of Cufflinks high-throughput sequencing data. In addition, provides | |
| 36 | numerous plotting functions for commonly used visualizations. | |
| 37 | ||
| 38 | %prep | |
| 39 | %setup -q -c -n %{packname} | |
| 40 | ||
| 41 | %build | |
| 42 | ||
| 43 | %install | |
| 44 | rm -rf $RPM_BUILD_ROOT | |
| 45 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 46 | ||
| 47 | R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 48 | ||
| 49 | %clean | |
| 50 | rm -rf $RPM_BUILD_ROOT | |
| 51 | ||
| 52 | %files | |
| 53 | %defattr(644,root,root,755) | |
| 54 | %dir %{_libdir}/R/library/%{packname} | |
| 55 | %doc %{_libdir}/R/library/%{packname}/doc | |
| 56 | %doc %{_libdir}/R/library/%{packname}/html | |
| 57 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 58 | %doc %{_libdir}/R/library/%{packname}/NEWS | |
| 59 | %{_libdir}/R/library/%{packname}/INDEX | |
| 60 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 61 | %{_libdir}/R/library/%{packname}/Meta | |
| 62 | %{_libdir}/R/library/%{packname}/R | |
| 63 | %{_libdir}/R/library/%{packname}/help | |
| 64 | %{_libdir}/R/library/%{packname}/data | |
| 65 | %{_libdir}/R/library/%{packname}/extdata | |
| 66 | %{_libdir}/R/library/%{packname}/reports |