R-affxparser.spec

   1 %define         packname        affxparser
   2
   3 Summary:        Affymetrix File Parsing SDK
   4 Name:           R-%{packname}
   5 Version:        1.34.0
   6 Release:        1
   7 License:        LGPL v2+
   8 Group:          Applications/Engineering
   9 Source0:        http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  dbcd64c4d496799d932af88b54eb3881
  11 URL:            http://bioconductor.org/packages/release/bioc/html/affxparser.html
  12 BuildRequires:  R
  13 BuildRequires:  texlive-latex
  14 Requires:       R
  15 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  16
  17 %description
  18 Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR).
  19 It provides methods for fast and memory efficient parsing of
  20 Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and
  21 binary-based files are supported. Currently, there are methods for
  22 reading chip definition file (CDF) and a cell intensity file (CEL).
  23 These files can be read either in full or in part. For example,
  24 probe signals from a few probesets can be extracted very quickly
  25 from a set of CEL files into a convenient list structure.
  26
  27 %prep
  28 %setup -q -c -n %{packname}
  29
  30 %build
  31
  32 %install
  33 rm -rf $RPM_BUILD_ROOT
  34 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  35
  36 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  37
  38 %clean
  39 rm -rf $RPM_BUILD_ROOT
  40
  41 %files
  42 %defattr(644,root,root,755)
  43 %dir %{_libdir}/R/library/%{packname}
  44 %doc %{_libdir}/R/library/%{packname}/html
  45 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  46 %doc %{_libdir}/R/library/%{packname}/NEWS
  47 %{_libdir}/R/library/%{packname}/INDEX
  48 %{_libdir}/R/library/%{packname}/NAMESPACE
  49 %{_libdir}/R/library/%{packname}/Meta
  50 %{_libdir}/R/library/%{packname}/R
  51 %{_libdir}/R/library/%{packname}/help
  52 %{_libdir}/R/library/%{packname}/libs
  53 %{_libdir}/R/library/%{packname}/extras
  54 %{_libdir}/R/library/%{packname}/info
  55 %{_libdir}/R/library/%{packname}/testscripts
  56