projects / packages / R-affxparser.git / blame
| Commit | Line | Data |
|---|---|---|
| 5d0c5cf1 JR |
1 | %define packname affxparser |
| 2 | ||
| 3 | Summary: Affymetrix File Parsing SDK | |
| 4 | Name: R-%{packname} | |
| 5 | Version: 1.34.0 | |
| 6 | Release: 1 | |
| 7 | License: LGPL v2+ | |
| 8 | Group: Applications/Engineering | |
| 9 | Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| 10 | # Source0-md5: dbcd64c4d496799d932af88b54eb3881 | |
| 11 | URL: http://bioconductor.org/packages/release/bioc/html/affxparser.html | |
| 12 | BuildRequires: R | |
| 13 | BuildRequires: texlive-latex | |
| 14 | Requires: R | |
| 15 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 16 | ||
| 17 | %description | |
| 18 | Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). | |
| 19 | It provides methods for fast and memory efficient parsing of | |
| 20 | Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and | |
| 21 | binary-based files are supported. Currently, there are methods for | |
| 22 | reading chip definition file (CDF) and a cell intensity file (CEL). | |
| 23 | These files can be read either in full or in part. For example, | |
| 24 | probe signals from a few probesets can be extracted very quickly | |
| 25 | from a set of CEL files into a convenient list structure. | |
| 26 | ||
| 27 | %prep | |
| 28 | %setup -q -c -n %{packname} | |
| 29 | ||
| 30 | %build | |
| 31 | ||
| 32 | %install | |
| 33 | rm -rf $RPM_BUILD_ROOT | |
| 34 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 35 | ||
| 36 | R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 37 | ||
| 38 | %clean | |
| 39 | rm -rf $RPM_BUILD_ROOT | |
| 40 | ||
| 41 | %files | |
| 42 | %defattr(644,root,root,755) | |
| 43 | %dir %{_libdir}/R/library/%{packname} | |
| 44 | %doc %{_libdir}/R/library/%{packname}/html | |
| 45 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 46 | %doc %{_libdir}/R/library/%{packname}/NEWS | |
| 47 | %{_libdir}/R/library/%{packname}/INDEX | |
| 48 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 49 | %{_libdir}/R/library/%{packname}/Meta | |
| 50 | %{_libdir}/R/library/%{packname}/R | |
| 51 | %{_libdir}/R/library/%{packname}/help | |
| 52 | %{_libdir}/R/library/%{packname}/libs | |
| 53 | %{_libdir}/R/library/%{packname}/extras | |
| 54 | %{_libdir}/R/library/%{packname}/info | |
| 55 | %{_libdir}/R/library/%{packname}/testscripts | |
| 56 |