]> git.pld-linux.org Git - packages/R-Gviz.git/commitdiff
- new master auto/th/R-Gviz-1.6.0-1
authorJan Rękorajski <baggins@pld-linux.org>
Fri, 29 Nov 2013 12:12:28 +0000 (13:12 +0100)
committerJan Rękorajski <baggins@pld-linux.org>
Fri, 29 Nov 2013 12:12:28 +0000 (13:12 +0100)
R-Gviz.spec [new file with mode: 0644]

diff --git a/R-Gviz.spec b/R-Gviz.spec
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+%define                packname        Gviz
+
+Summary:       Plotting data and annotation information along genomic coordinates
+Name:          R-%{packname}
+Version:       1.6.0
+Release:       1
+License:       Artistic 2.0
+Group:         X11/Applications
+Source0:       http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: 0bcff07c6791c32fce881bc3991ff0f7
+URL:           http://www.bioconductor.org/packages/release/bioc/html/Gviz.html
+BuildRequires: R
+BuildRequires: R-biovizBase
+BuildRequires: R-cran-latticeExtra
+BuildRequires: texlive-latex
+Requires:      R
+Requires:      R-biovizBase
+Requires:      R-cran-latticeExtra
+BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Genomic data analyses requires integrated visualization of known
+genomic information and new experimental data. Gviz uses the biomaRt
+and the rtracklayer packages to perform live annotation queries to
+Ensembl and UCSC and translates this to e.g. gene/transcript
+structures in viewports of the grid graphics package. This results in
+genomic information plotted together with your data.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/doc/
+%doc %{_libdir}/R/library/%{packname}/html/
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/data/
+%{_libdir}/R/library/%{packname}/extdata/
+%{_libdir}/R/library/%{packname}/lib/
+%{_libdir}/R/library/%{packname}/scripts/
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