R-Gviz.spec

   1 %define         packname        Gviz
   2
   3 Summary:        Plotting data and annotation information along genomic coordinates
   4 Name:           R-%{packname}
   5 Version:        1.6.0
   6 Release:        1
   7 License:        Artistic 2.0
   8 Group:          X11/Applications
   9 Source0:        http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  0bcff07c6791c32fce881bc3991ff0f7
  11 URL:            http://www.bioconductor.org/packages/release/bioc/html/Gviz.html
  12 BuildRequires:  R
  13 BuildRequires:  R-biovizBase
  14 BuildRequires:  R-cran-latticeExtra
  15 BuildRequires:  texlive-latex
  16 Requires:       R
  17 Requires:       R-biovizBase
  18 Requires:       R-cran-latticeExtra
  19 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  20
  21 %description
  22 Genomic data analyses requires integrated visualization of known
  23 genomic information and new experimental data. Gviz uses the biomaRt
  24 and the rtracklayer packages to perform live annotation queries to
  25 Ensembl and UCSC and translates this to e.g. gene/transcript
  26 structures in viewports of the grid graphics package. This results in
  27 genomic information plotted together with your data.
  28
  29 %prep
  30 %setup -c -q -n %{packname}
  31
  32 %build
  33
  34 %install
  35 rm -rf $RPM_BUILD_ROOT
  36 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  37
  38 %{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  39
  40 %clean
  41 rm -rf $RPM_BUILD_ROOT
  42
  43 %files
  44 %defattr(644,root,root,755)
  45 %dir %{_libdir}/R/library/%{packname}/
  46 %doc %{_libdir}/R/library/%{packname}/doc/
  47 %doc %{_libdir}/R/library/%{packname}/html/
  48 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  49 %doc %{_libdir}/R/library/%{packname}/NEWS
  50 %{_libdir}/R/library/%{packname}/NAMESPACE
  51 %{_libdir}/R/library/%{packname}/INDEX
  52 %{_libdir}/R/library/%{packname}/Meta/
  53 %{_libdir}/R/library/%{packname}/R/
  54 %{_libdir}/R/library/%{packname}/help/
  55 %{_libdir}/R/library/%{packname}/data/
  56 %{_libdir}/R/library/%{packname}/extdata/
  57 %{_libdir}/R/library/%{packname}/lib/
  58 %{_libdir}/R/library/%{packname}/scripts/