R-biomaRt.spec

   1 %define         packname        biomaRt
   2
   3 Summary:        R Interface to BioMart databases
   4 Name:           R-%{packname}
   5 Version:        2.18.0
   6 Release:        1
   7 License:        Artistic 2.0
   8 Group:          X11/Applications
   9 Source0:        http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  2692dafbad92824a549ed451d5fccabc
  11 URL:            http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html
  12 BuildRequires:  R-cran-RCurl
  13 BuildRequires:  R-cran-XML
  14 BuildRequires:  R
  15 BuildRequires:  texlive-latex
  16 Requires:       R-cran-RCurl
  17 Requires:       R-cran-XML
  18 Requires:       R
  19 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  20
  21 %description
  22 In recent years a wealth of biological data has become available in
  23 public data repositories. Easy access to these valuable data resources
  24 and firm integration with data analysis is needed for comprehensive
  25 bioinformatics data analysis. biomaRt provides an interface to a
  26 growing collection of databases implementing the BioMart software
  27 suite (http://www.biomart.org). The package enables retrieval of large
  28 amounts of data in a uniform way without the need to know the
  29 underlying database schemas or write complex SQL queries. Examples of
  30 BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene,
  31 Wormbase and dbSNP mapped to Ensembl. These major databases give
  32 biomaRt users direct access to a diverse set of data and enable a wide
  33 range of powerful online queries from gene annotation to database
  34 mining.
  35
  36 %prep
  37 %setup -c -q -n %{packname}
  38
  39 %build
  40
  41 %install
  42 rm -rf $RPM_BUILD_ROOT
  43 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  44
  45 %{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  46
  47 %clean
  48 rm -rf $RPM_BUILD_ROOT
  49
  50 %files
  51 %defattr(644,root,root,755)
  52 %dir %{_libdir}/R/library/%{packname}/
  53 %doc %{_libdir}/R/library/%{packname}/doc/
  54 %doc %{_libdir}/R/library/%{packname}/html/
  55 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  56 %doc %{_libdir}/R/library/%{packname}/CITATION
  57 %{_libdir}/R/library/%{packname}/NAMESPACE
  58 %{_libdir}/R/library/%{packname}/INDEX
  59 %{_libdir}/R/library/%{packname}/Meta/
  60 %{_libdir}/R/library/%{packname}/R/
  61 %{_libdir}/R/library/%{packname}/help/
  62 %{_libdir}/R/library/%{packname}/scripts/