R-Biostrings.spec

   1 %define         packname        Biostrings
   2
   3 Summary:        String objects representing biological sequences
   4 Name:           R-%{packname}
   5 Version:        2.30.1
   6 Release:        3
   7 License:        Artistic 2.0
   8 Group:          Applications/Engineering
   9 Source0:        http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  acf4d4047855f20096e751cf5fadbf5e
  11 URL:            http://bioconductor.org/packages/release/bioc/html/Biostrings.html
  12 BuildRequires:  R
  13 BuildRequires:  R-Biobase
  14 BuildRequires:  R-IRanges-devel >= 1.6.6
  15 BuildRequires:  R-XVector-devel
  16 BuildRequires:  texlive-latex
  17 Requires:       R
  18 Requires:       R-Biobase
  19 Requires:       R-IRanges >= 1.6.6
  20 Requires:       R-XVector
  21 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  22
  23 %description
  24 Memory efficient string containers, string matching algorithms, and
  25 other utilities, for fast manipulation of large biological sequences
  26 or set of sequences.
  27
  28 %package        devel
  29 Summary:        Development files for %{name}
  30 Group:          Development/Libraries
  31 Requires:       %{name} = %{version}-%{release}
  32
  33 %description    devel
  34 The %{name}-devel package contains libraries and header files for
  35 developing applications that use %{name}.
  36
  37 %prep
  38 %setup -q -c -n %{packname}
  39
  40 %build
  41
  42 %install
  43 rm -rf $RPM_BUILD_ROOT
  44 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  45
  46 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  47
  48 %clean
  49 rm -rf $RPM_BUILD_ROOT
  50
  51 %files
  52 %defattr(644,root,root,755)
  53 %dir %{_libdir}/R/library/%{packname}/
  54 %doc %{_libdir}/R/library/%{packname}/doc
  55 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  56 %doc %{_libdir}/R/library/%{packname}/html
  57 %doc %{_libdir}/R/library/%{packname}/NEWS
  58 %{_libdir}/R/library/%{packname}/help
  59 %{_libdir}/R/library/%{packname}/R
  60 %{_libdir}/R/library/%{packname}/extdata
  61 %{_libdir}/R/library/%{packname}/data
  62 %{_libdir}/R/library/%{packname}/libs
  63 %{_libdir}/R/library/%{packname}/Meta
  64 %{_libdir}/R/library/%{packname}/UnitTests
  65 %{_libdir}/R/library/%{packname}/INDEX
  66 %{_libdir}/R/library/%{packname}/NAMESPACE
  67
  68 %files devel
  69 %{_libdir}/R/library/%{packname}/include