projects / packages / R-Gviz.git / blame
| Commit | Line | Data |
|---|---|---|
| 14195db7 JR |
1 | %define packname Gviz |
| 2 | ||
| 3 | Summary: Plotting data and annotation information along genomic coordinates | |
| 4 | Name: R-%{packname} | |
| 5 | Version: 1.6.0 | |
| 6 | Release: 1 | |
| 7 | License: Artistic 2.0 | |
| 8 | Group: X11/Applications | |
| 9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| 10 | # Source0-md5: 0bcff07c6791c32fce881bc3991ff0f7 | |
| 11 | URL: http://www.bioconductor.org/packages/release/bioc/html/Gviz.html | |
| 12 | BuildRequires: R | |
| 13 | BuildRequires: R-biovizBase | |
| 14 | BuildRequires: R-cran-latticeExtra | |
| 15 | BuildRequires: texlive-latex | |
| 16 | Requires: R | |
| 17 | Requires: R-biovizBase | |
| 18 | Requires: R-cran-latticeExtra | |
| 19 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 20 | ||
| 21 | %description | |
| 22 | Genomic data analyses requires integrated visualization of known | |
| 23 | genomic information and new experimental data. Gviz uses the biomaRt | |
| 24 | and the rtracklayer packages to perform live annotation queries to | |
| 25 | Ensembl and UCSC and translates this to e.g. gene/transcript | |
| 26 | structures in viewports of the grid graphics package. This results in | |
| 27 | genomic information plotted together with your data. | |
| 28 | ||
| 29 | %prep | |
| 30 | %setup -c -q -n %{packname} | |
| 31 | ||
| 32 | %build | |
| 33 | ||
| 34 | %install | |
| 35 | rm -rf $RPM_BUILD_ROOT | |
| 36 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 37 | ||
| 38 | %{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 39 | ||
| 40 | %clean | |
| 41 | rm -rf $RPM_BUILD_ROOT | |
| 42 | ||
| 43 | %files | |
| 44 | %defattr(644,root,root,755) | |
| 45 | %dir %{_libdir}/R/library/%{packname}/ | |
| 46 | %doc %{_libdir}/R/library/%{packname}/doc/ | |
| 47 | %doc %{_libdir}/R/library/%{packname}/html/ | |
| 48 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 49 | %doc %{_libdir}/R/library/%{packname}/NEWS | |
| 50 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 51 | %{_libdir}/R/library/%{packname}/INDEX | |
| 52 | %{_libdir}/R/library/%{packname}/Meta/ | |
| 53 | %{_libdir}/R/library/%{packname}/R/ | |
| 54 | %{_libdir}/R/library/%{packname}/help/ | |
| 55 | %{_libdir}/R/library/%{packname}/data/ | |
| 56 | %{_libdir}/R/library/%{packname}/extdata/ | |
| 57 | %{_libdir}/R/library/%{packname}/lib/ | |
| 58 | %{_libdir}/R/library/%{packname}/scripts/ |