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| author | Jan Rękorajski | 2013-11-29 12:12:28 (GMT) |
|---|---|---|
| committer | Jan Rękorajski | 2013-11-29 12:12:28 (GMT) |
| commit | 14195db77bc62a65410abd60f66538203d3bd137 (patch) | |
| tree | 9991bcb433ec4c4aca2925f549d1210a0f5aa9b7 | |
| download | R-Gviz-master.zip R-Gviz-master.tar.gz | |
| -rw-r--r-- | R-Gviz.spec | 58 |
1 files changed, 58 insertions, 0 deletions
diff --git a/R-Gviz.spec b/R-Gviz.spec new file mode 100644 index 0000000..fb7c15d --- /dev/null +++ b/R-Gviz.spec @@ -0,0 +1,58 @@ +%define packname Gviz + +Summary: Plotting data and annotation information along genomic coordinates +Name: R-%{packname} +Version: 1.6.0 +Release: 1 +License: Artistic 2.0 +Group: X11/Applications +Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz +# Source0-md5: 0bcff07c6791c32fce881bc3991ff0f7 +URL: http://www.bioconductor.org/packages/release/bioc/html/Gviz.html +BuildRequires: R +BuildRequires: R-biovizBase +BuildRequires: R-cran-latticeExtra +BuildRequires: texlive-latex +Requires: R +Requires: R-biovizBase +Requires: R-cran-latticeExtra +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Genomic data analyses requires integrated visualization of known +genomic information and new experimental data. Gviz uses the biomaRt +and the rtracklayer packages to perform live annotation queries to +Ensembl and UCSC and translates this to e.g. gene/transcript +structures in viewports of the grid graphics package. This results in +genomic information plotted together with your data. + +%prep +%setup -c -q -n %{packname} + +%build + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library + +%{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%dir %{_libdir}/R/library/%{packname}/ +%doc %{_libdir}/R/library/%{packname}/doc/ +%doc %{_libdir}/R/library/%{packname}/html/ +%doc %{_libdir}/R/library/%{packname}/DESCRIPTION +%doc %{_libdir}/R/library/%{packname}/NEWS +%{_libdir}/R/library/%{packname}/NAMESPACE +%{_libdir}/R/library/%{packname}/INDEX +%{_libdir}/R/library/%{packname}/Meta/ +%{_libdir}/R/library/%{packname}/R/ +%{_libdir}/R/library/%{packname}/help/ +%{_libdir}/R/library/%{packname}/data/ +%{_libdir}/R/library/%{packname}/extdata/ +%{_libdir}/R/library/%{packname}/lib/ +%{_libdir}/R/library/%{packname}/scripts/ |