#
-# Conditional build:
-# _without_gnome - without GNOME support
+# Conditional build
+%bcond_without tcl # disable tcl support
+%bcond_without tests # do not run "make check"
#
+# NOTE:
+# - /etc/localtime must be present for tests to work
+#
+# TODO:
+# - faulty build on i486 (test stats-Ex.R):
+# error in optim(init[mask], getLike, method = "L-BFGS-B", lower = rep(0, :
+# non-finite value supplied by optim
+# - script for rpm to autoprovides/autorequires R internals
+#
+%include /usr/lib/rpm/macros.perl
Summary: A language for data analysis and graphics
-Summary(pl): Jêzyk do analizy danych oraz grafiki
+Summary(pl.UTF-8): Język do analizy danych oraz grafiki
Name: R
-Version: 1.6.1
+Version: 2.11.0
Release: 2
License: Mixed (distributable), mostly GPL
Group: Development/Languages
-Source0: ftp://stat.ethz.ch/R-CRAN/src/base/%{name}-%{version}.tgz
-# Source0-md5: 7c9b8e8582812448aedd0322bcc135eb
-Source1: ftp://stat.ethz.ch/R-CRAN/src/contrib/KernSmooth_2.22-8.tar.gz
-# Source1-md5: 6b1c0627c534e9229110dbde30dbeeec
-Source2: ftp://stat.ethz.ch/R-CRAN/src/contrib/VR_7.0-9.tar.gz
-# Source2-md5: 95755187724901757f94d20875a1ea6c
-Source3: ftp://stat.ethz.ch/R-CRAN/src/contrib/acepack_1.3-2.tar.gz
-# Source3-md5: 334452ea1a1ba351154aea9c4eb9912d
-Source4: ftp://stat.ethz.ch/R-CRAN/src/contrib/boot_1.2-8.tar.gz
-# Source4-md5: 48f5bfbdd3b81dece8b206a660cd8e08
-Source5: ftp://stat.ethz.ch/R-CRAN/src/contrib/bootstrap_1.0-11.tar.gz
-# Source5-md5: 7deba906ab0e88349c47a2fb3e8c5a9e
-Source6: ftp://stat.ethz.ch/R-CRAN/src/contrib/cluster_1.6-2.tar.gz
-# Source6-md5: 4922165554622775c21889596041fe6c
-Source7: ftp://stat.ethz.ch/R-CRAN/src/contrib/date_1.2-12.tar.gz
-# Source7-md5: fbc71aba3c8401d7aede6f33d8c5c1aa
-Source8: ftp://stat.ethz.ch/R-CRAN/src/contrib/e1071_1.3-5.tar.gz
-# Source8-md5: c835647201dbe4d908841f733a735c33
-Source9: ftp://stat.ethz.ch/R-CRAN/src/contrib/foreign_0.5-6.tar.gz
-# Source9-md5: 4a79983be6920326242f468a9184fccb
-Source10: ftp://stat.ethz.ch/R-CRAN/src/contrib/fracdiff_1.0-8.tar.gz
-# Source10-md5: 58e196dcd8512e021bdb687b071c6dfb
-Source11: ftp://stat.ethz.ch/R-CRAN/src/contrib/gee_4.13-10.tar.gz
-# Source11-md5: 7f32a7f7b022dd366d27482a3561d2a6
-Source12: ftp://stat.ethz.ch/R-CRAN/src/contrib/grid_0.7-1.tar.gz
-# Source12-md5: 01cfb0d1c1fa134bb05b2844572edf8e
-Source13: ftp://stat.ethz.ch/R-CRAN/src/contrib/lattice_0.6-6.tar.gz
-# Source13-md5: 588deaa2f8189dfdcc9ce0f3eafce6e2
-Source14: ftp://stat.ethz.ch/R-CRAN/src/contrib/leaps_2.5.tar.gz
-# Source14-md5: 47567135b492a9ee3308b710e46264e5
-Source15: ftp://stat.ethz.ch/R-CRAN/src/contrib/mgcv_0.8-6.tar.gz
-# Source15-md5: eeb171868243db04f0f5300df7dedbe6
-Source16: ftp://stat.ethz.ch/R-CRAN/src/contrib/mlbench_0.5-7.tar.gz
-# Source16-md5: 00ea4e9ab190ff5c86fc692947d85667
-Source17: ftp://stat.ethz.ch/R-CRAN/src/contrib/nlme_3.1-33.tar.gz
-# Source17-md5: 25870da409c0d6e0ef1b220e420dba0f
-Source18: ftp://stat.ethz.ch/R-CRAN/src/contrib/oz_1.0-6.tar.gz
-# Source18-md5: 0582275bed974be04ad8c194d3c61b54
-Source19: ftp://stat.ethz.ch/R-CRAN/src/contrib/polynom_1.1-10.tar.gz
-# Source19-md5: 427e486a667e051dab899e3580072c0f
-Source20: ftp://stat.ethz.ch/R-CRAN/src/contrib/princurve_1.1-5.tar.gz
-# Source20-md5: d0092745f92687c54b055e2770fd6e5b
-Source21: ftp://stat.ethz.ch/R-CRAN/src/contrib/quadprog_1.4-5.tar.gz
-# Source21-md5: 00c6b832f35632c80eadbaa700d54c73
-Source22: ftp://stat.ethz.ch/R-CRAN/src/contrib/rpart_3.1-8.tar.gz
-# Source22-md5: 4b827ca24b940c86601df81ca19b55c8
-Source23: ftp://stat.ethz.ch/R-CRAN/src/contrib/survival_2.9-6.tar.gz
-# Source23-md5: f50fdeb0574953b4deff399450cd0edd
-Source24: ftp://stat.ethz.ch/R-CRAN/src/contrib/xgobi_1.2-7.tar.gz
-# Source24-md5: 6d1c3fb1c8f3bdcc00263ef21875c0eb
-Source25: ftp://stat.ethz.ch/R-CRAN/src/contrib/Archive/integrate_2.2-3.tar.gz
-# Source25-md5: 40cc14374a0992871dd651d41289b3e6
-Source26: %{name}.desktop
-URL: http://stat.auckland.ac.nz/r/r.html
+# CRAN master site: ftp://cran.r-project.org/pub/R/src/
+Source0: ftp://stat.ethz.ch/R-CRAN/src/base/R-2/%{name}-%{version}.tar.gz
+# Source0-md5: c6c1e866299f533617750889c729bfb3
+Source1: %{name}.desktop
+URL: http://www.r-project.org/
BuildRequires: autoconf
BuildRequires: automake
-BuildRequires: libstdc++-devel
+BuildRequires: blas-devel
+BuildRequires: bzip2-devel
+BuildRequires: cairo-devel
BuildRequires: gcc-c++
-BuildRequires: gcc-g77
-BuildRequires: perl >= 5.004
+BuildRequires: gcc-fortran
+BuildRequires: gettext-devel
+BuildRequires: lapack-devel >= 3.1.1-4
+BuildRequires: libicu-devel
+BuildRequires: libjpeg-devel >= 6b
+BuildRequires: libpng-devel >= 1.0.5
+BuildRequires: libstdc++-devel
BuildRequires: libtool
-BuildRequires: tetex-latex
+BuildRequires: libxml2-devel >= 2.6.26
+BuildRequires: pango-devel
+BuildRequires: pcre-devel
+BuildRequires: perl-base >= 1:5.6
+BuildRequires: pkgconfig
+BuildRequires: readline-devel
+BuildRequires: rpm-perlprov
+%{?with_tcl:BuildRequires: tcl-devel}
BuildRequires: tetex-dvips
+BuildRequires: tetex-latex
BuildRequires: tetex-pdftex
+%{?with_tcl:BuildRequires: tk-devel}
+BuildRequires: xorg-lib-libX11-devel
+BuildRequires: xorg-lib-libXmu-devel
+BuildRequires: xorg-lib-libXt-devel
+BuildRequires: xz-devel
BuildRequires: zip
-BuildRequires: XFree86-devel
-BuildRequires: blas-devel
-BuildRequires: libpng-devel >= 1.0.5
-BuildRequires: libjpeg-devel >= 6b
-BuildRequires: libxml-devel
-BuildRequires: zlib >= 1.1.3
-BuildRequires: readline-devel
-#BuildRequires: lpr
-%{!?_without_gnome:BuildRequires: gnome-libs-devel}
-%{!?_without_gnome:BuildRequires: ORBit-devel}
-%{!?_without_gnome:BuildRequires: libglade-gnome-devel}
-Provides: R-base
-Provides: R-contrib
+BuildRequires: zlib-devel >= 1.1.3
+#Requires: lpr
+Requires(post): perl-base
+Requires(post): textutils
+Suggests: rkward
+Obsoletes: R-base
+Obsoletes: R-contrib
+Obsoletes: R-recommended
BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
%description
resulting language is very similar in appearance to S, the underlying
implementation and semantics are derived from Scheme.
-%description -l pl
-System do obliczeñ statystycznych i grafiki. R sk³ada siê z jêzyka
-oraz ¶rodowiska uruchomieniowego z grafik±, debuggerem, dostêpem do
-niektórych funkcji systemowych oraz mo¿liwo¶ci± uruchamiania programów
+%description -l pl.UTF-8
+System do obliczeń statystycznych i grafiki. R składa się z języka
+oraz środowiska uruchomieniowego z grafiką, debuggerem, dostępem do
+niektórych funkcji systemowych oraz możliwością uruchamiania programów
zapisanych w skryptach.
-Jêzyk R by³ zainspirowany dwoma istniej±cymi jêzykami: S (Beckera,
+Język R był zainspirowany dwoma istniejącymi językami: S (Beckera,
Chambersa i Wilksa) oraz Scheme (Sussmana). R jest podobny do S, ale
-implementacja i semantyka wywodzi siê ze Scheme.
-
-%package base
-Summary: The R base distribution
-Summary(pl): Podstawowa dystrybucja R
-License: GPL v2 / LGPL
-Group: Development/Languages
-Requires(post): textutils
-Requires(post): perl
-Provides: R-ctest R-eda R-lqs R-methods R-modreg R-mva R-nls R-splines
-Provides: R-stepfun R-tcltk R-tools R-ts
-
-%description base
-R is a language and run-time environment for carrying out interactive
-statistical data analysis. It is not entirely dissimilar to the S
-language developed at AT&T Bell Laboratories (and now Lucent
-Technologies). Indeed, S users will find the environment quite
-familiar and a good deal of S software will run without change under
-R.
-
-%description base -l pl
-R jest jêzykiem i ¶rodowiskiem uruchomieniowym do interaktywnej
-analizy danych statystycznych. R nie jest ca³kowicie zgodny z jêzykiem
-S opracowanym w AT&T Bell Laboratiories (a teraz Lucent Technologies),
-mimo to u¿ytkownicy S zauwa¿± zbli¿one ¶rodowisko, a du¿a czê¶æ
-oprogramowania w S bêdzie dzia³a³a bez zmian w R.
-
-%package recommended
-Summary: Recommended contributed packages for the R language
-Summary(pl): Zalecane dodatkowe pakiety do jêzyka R
-Group: Development/Languages
-Provides: R-KernSmooth R-VR R-boot R-cluster R-foreign R-grid
-Provides: R-lattice R-mgcv R-nlme R-rpart R-survival
-License: GPL, free or free for non-commercial use
-URL: http://www.ci.tuwien.ac.at/R/
-Requires(post,postun): R-base
-Requires(post,postun): textutils
-Requires(post,postun): perl
-Requires: R-base >= %{version}
-Obsoletes: R-survival4 R-MASS R-clus R-class R-nnet R-spatial
-
-%description recommended
-Packages which extend the capabilities of the R base distribution and
-are distributed on the Comprehensive R Archive Network (CRAN).
-
-%description recommended -l pl
-Pakiety rozszerzaj±ce mo¿liwo¶ci podstawowej dystrybucji jêzyka R,
-dystrubuowane w archiwum CRAN (Comprehensive R Archive Network).
-
-%package contrib
-Summary: Contributed packages for the R language
-Summary(pl): Dodatkowe pakiety do jêzyka R
-License: Mixed
-Group: Development/Languages
-URL: http://www.ci.tuwien.ac.at/R/
-Requires(post,postun): R-base
-Requires(post,postun): textutils
-Requires(post,postun): perl
-Requires: R-base >= %{version}
-Requires: R-VR
-Provides: R-acepack R-bootstrap R-date R-e1071 R-fracdiff R-gee
-Provides: R-integrate R-leaps R-oz R-polynom R-princurve R-quadprog
-Provides: R-xgobi
-Obsoletes: R-principal.curve
-
-%description contrib
-Packages which extend the capabilities of the R base distribution and
-are distributed on the Comprehensive R Archive Network (CRAN).
-
-%description contrib -l pl
-Pakiety rozszerzaj±ce mo¿liwo¶ci podstawowej dystrybucji jêzyka R,
-dystrubuowane w archiwum CRAN (Comprehensive R Archive Network).
-
-%package mlbench
-Summary: Machine learning benchmarks
-Summary(pl): Testy wydajno¶ci uczenia maszyny
-Group: Development/Languages
-License: GPL
-URL: http://www.ics.uci.edu/~mlearn/MLRepository.html
-Requires(post,postun): R-base
-Requires(post,postun): textutils
-Requires(post,postun): perl
-Requires: R-base >= %{version}
-
-%description mlbench
-R package which contains a collection of real-world datasets and
-functions for creating artificial datasets that work as benchmarks for
-machine learning methods.
-
-%description mlbench -l pl
-Ten podpakiet R zawiera zestaw rzeczywistych danych i funkcji do
-tworzenia sztucznych danych s³u¿±cych jako test wydajno¶ci metod
-uczenia maszyny.
+implementacja i semantyka wywodzi się ze Scheme.
%prep
-%setup -q -c -n R-cran -T -b 1
-%setup -q -c -n R-cran -T -D -b 2
-%setup -q -c -n R-cran -T -D -b 3
-%setup -q -c -n R-cran -T -D -b 4
-%setup -q -c -n R-cran -T -D -b 5
-%setup -q -c -n R-cran -T -D -b 6
-%setup -q -c -n R-cran -T -D -b 7
-%setup -q -c -n R-cran -T -D -b 8
-%setup -q -c -n R-cran -T -D -b 9
-%setup -q -c -n R-cran -T -D -b 10
-%setup -q -c -n R-cran -T -D -b 11
-%setup -q -c -n R-cran -T -D -b 12
-%setup -q -c -n R-cran -T -D -b 13
-%setup -q -c -n R-cran -T -D -b 14
-%setup -q -c -n R-cran -T -D -b 15
-%setup -q -c -n R-cran -T -D -b 16
-%setup -q -c -n R-cran -T -D -b 17
-%setup -q -c -n R-cran -T -D -b 18
-%setup -q -c -n R-cran -T -D -b 19
-%setup -q -c -n R-cran -T -D -b 20
-%setup -q -c -n R-cran -T -D -b 21
-%setup -q -c -n R-cran -T -D -b 22
-%setup -q -c -n R-cran -T -D -b 23
-%setup -q -c -n R-cran -T -D -b 24
-%setup -q -c -n R-cran -T -D -b 25
%setup -q
-#%setup -q -T -D -a 14
-
-# These files have the path for PERL hard-coded as /usr/local/bin/perl
-# We need to remove them to avoid dependency problems
-rm -f ./doc/keyword-test.orig ./etc/undoc/R-funs.orig ./etc/undoc/extrExamp.orig
%build
-%{__aclocal}
+%{__aclocal} -I m4
%{__autoconf}
-cp -f /usr/share/automake/config.* .
%configure \
- %{!?_without_gnome:--with-gnome} \
- %{?_without_gnome:--without-gnome} \
- --without-tcltk
+ --enable-R-shlib \
+ --enable-linux-lfs \
+ --with-system-zlib \
+ --with-system-bzlib \
+ --with-system-pcre \
+ --with-system-xz \
+ --with-libpng \
+ --with-jpeglib \
+ --with-blas \
+ --with-lapack \
+ --with-readline \
+ --with%{!?with_tcl:out}-tcltk \
+ --with-cairo \
+ --with-libpng \
+ --with-jpeglib \
+ --with-system-zlib \
+ --with-system-bzlib \
+ --with-system-pcre \
+ --with-iconv \
+ --with-ICU \
+ --with-x \
+ --with-recommended-packages
%{__make}
-%{__make} help
-%{__make} html
-%{__make} clean
-
-# Install contrib packages
-#
-R_HOME=`pwd`;export R_HOME
-PERL5LIB=`pwd`/share/perl;export PERL5LIB
-cd ../R-cran
-for pkg in `ls`
-do
-${R_HOME}/bin/INSTALL ${pkg}
-done
-cd ${R_HOME}
-
-#Remove old template files.
-#
-for oldinfile in `find . -name '*.in' -print`
-do
- mv ${oldinfile} ${oldinfile}.old
-# rm ${oldinfile}
-done
-
-# Gather documentation from contrib packages in one directory
-# Assume that anything not in one of the standard directories is
-# documentation, and copy it.
-#
-mkdir ${R_HOME}/contrib
-cd ${RPM_BUILD_DIR}/R-cran
-for pkg in `ls`; do
- if [ -d ${pkg} ]; then
- mkdir ${R_HOME}/${pkg}
- for docfile in `ls ${pkg}`; do
- case $docfile in
- INDEX) ;;
- TITLE) ;;
- R) ;;
- man) ;;
- src) ;;
- src-c) ;;
- data) ;;
- *) cp -R -P ${pkg}/${docfile} ${R_HOME};;
- esac
- done
- fi
-done
-cd ${R_HOME}
+%if %{with tests}
+%{__make} check
+%endif
+%{__make} docs pdf info
%install
rm -rf $RPM_BUILD_ROOT
-install -d $RPM_BUILD_ROOT{%{_bindir},%{_mandir}/man1,%{_libdir}/R,%{_applnkdir}/Scientific/Numerics}
+install -d $RPM_BUILD_ROOT{%{_bindir},%{_mandir}/man1,%{_libdir}/R,%{_includedir},%{_desktopdir}}
+install -d $RPM_BUILD_ROOT%{perl_vendorlib}/{R,Text}
+
+%{__make} -j1 install \
+ DESTDIR=$RPM_BUILD_ROOT
-install %{SOURCE26} $RPM_BUILD_ROOT%{_applnkdir}/Scientific/Numerics/%{name}.desktop
+install %{SOURCE1} $RPM_BUILD_ROOT%{_desktopdir}
-mv doc/R.1 $RPM_BUILD_ROOT%{_mandir}/man1/
-sed "s,`pwd`,%{_libdir}/R,g" < bin/R > bin/R. ; mv bin/R. bin/R
-mv bin/R $RPM_BUILD_ROOT%{_bindir}/R
+mv $RPM_BUILD_ROOT%{_libdir}/R/lib/libR*.so $RPM_BUILD_ROOT%{_libdir}
+mv $RPM_BUILD_ROOT%{_libdir}/%{name}/include $RPM_BUILD_ROOT%{_includedir}/R
+ln -sf %{_includedir}/R $RPM_BUILD_ROOT%{_libdir}/R/include
-find . -name 'Makefile*' -exec rm -f {} \;
-rm -rf etc/*.old
+(cd $RPM_BUILD_ROOT%{_libdir}/%{name}/share/perl/R/
+for f in * ; do
+ ln -s %{_libdir}/%{name}/share/perl/R/$f $RPM_BUILD_ROOT%{perl_vendorlib}/R/
+done)
+(cd $RPM_BUILD_ROOT%{_libdir}/%{name}/share/perl/Text
+for f in * ; do
+ ln -s %{_libdir}/%{name}/share/perl/Text/$f $RPM_BUILD_ROOT%{perl_vendorlib}/Text/
+done)
-cp -R AUTHORS afm bin doc etc include library modules share \
- $RPM_BUILD_ROOT%{_libdir}/R
+rm -r $RPM_BUILD_ROOT%{perl_vendorlib}/R
+rm -r $RPM_BUILD_ROOT%{_libdir}/R/share/perl/File
+mv $RPM_BUILD_ROOT%{_libdir}/R/share/perl/R $RPM_BUILD_ROOT%{perl_vendorlib}
%clean
rm -rf $RPM_BUILD_ROOT
-%post base
-(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-
-#%preun base
-## These files are not owned by any package, so we have to remove them
-## but only if this is the last version of R-base on the system.
-##
-#if [ "$1" = 0 ];
-#then
-# rm -f %{_libdir}/R/doc/html/search/index.txt
-# rm -f %{_libdir}/R/doc/html/packages.html
-#fi
+%post -p /sbin/ldconfig
+%postun -p /sbin/ldconfig
-%post contrib
-(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-
-%postun contrib
-if [ -f ../bin/Rcmd ];then
-(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-fi
-
-%post recommended
-(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-
-%postun recommended
-if [ -f ../bin/Rcmd ];then
-(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-fi
-
-%post mlbench
-(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-
-%postun mlbench
-if [ -f ../bin/Rcmd ];then
-(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-fi
-
-%files base
+%files
%defattr(644,root,root,755)
+%doc NEWS README doc/{AUTHORS,COPYRIGHTS,FAQ,RESOURCES,THANKS}
+
%{_mandir}/man1/R.1*
+%{_mandir}/man1/Rscript*
%attr(755,root,root) %{_bindir}/R
+%attr(755,root,root) %{_bindir}/Rscript
%dir %{_libdir}/R
-%{_libdir}/R/afm
%attr(755,root,root) %{_libdir}/R/bin
+%attr(755,root,root) %{_libdir}/libR*.so
%{_libdir}/R/etc
%{_libdir}/R/include
+%{_includedir}/R
%{_libdir}/R/share
-%{_libdir}/R/AUTHORS
+%{_libdir}/R/COPYING
+%{_libdir}/R/NEWS
+%{_libdir}/R/SVN-REVISION
%dir %{_libdir}/R/library
-%{_libdir}/R/library/*.css
-%{_libdir}/R/library/base
-%{_libdir}/R/library/ctest
-%{_libdir}/R/library/eda
-%{_libdir}/R/library/lqs
-%{_libdir}/R/library/methods
-%{_libdir}/R/library/modreg
-%{_libdir}/R/library/mva
-%{_libdir}/R/library/nls
-%{_libdir}/R/library/splines
-%{_libdir}/R/library/stepfun
-%{_libdir}/R/library/tcltk
-%{_libdir}/R/library/tools
-%{_libdir}/R/library/ts
-%{_libdir}/R/modules
-%doc BUGS COPYRIGHTS FAQ NEWS README RESOURCES THANKS Y2K
+%{_libdir}/%{name}/library/R.css
# %{_libdir}/R/doc %except %{_libdir}/R/doc/html/{packages.html,search/index.txt}
%dir %{_libdir}/R/doc
%{_libdir}/R/doc/[KRm]*
%dir %{_libdir}/R/doc/html
%{_libdir}/R/doc/html/*.css
%{_libdir}/R/doc/html/[Ra-lr-u]*.html
-%{_libdir}/R/doc/html/packages-head.html
+%{_libdir}/R/doc/html/packages-head*.html
%{_libdir}/R/doc/html/*.jpg
-%dir %{_libdir}/R/doc/html/search
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