+# TODO:
+# - move perl R libraries to standard perl location
+# - script for rpm to autoprovides/autorequires R internals
#
# Conditional build:
-# _without_gnome - without gnome support
+%bcond_without gnome # without GNOME support
#
+%include /usr/lib/rpm/macros.perl
Summary: A language for data analysis and graphics
Summary(pl): Jêzyk do analizy danych oraz grafiki
Name: R
-Version: 1.6.1
-Release: 1
-Source0: ftp://stat.ethz.ch/R-CRAN/src/base/%{name}-%{version}.tgz
-Source1: ftp://stat.ethz.ch/R-CRAN/src/contrib/KernSmooth_2.22-8.tar.gz
-Source2: ftp://stat.ethz.ch/R-CRAN/src/contrib/VR_7.0-9.tar.gz
-Source3: ftp://stat.ethz.ch/R-CRAN/src/contrib/acepack_1.3-2.tar.gz
-Source4: ftp://stat.ethz.ch/R-CRAN/src/contrib/boot_1.2-8.tar.gz
-Source5: ftp://stat.ethz.ch/R-CRAN/src/contrib/bootstrap_1.0-11.tar.gz
-Source6: ftp://stat.ethz.ch/R-CRAN/src/contrib/cluster_1.6-2.tar.gz
-Source7: ftp://stat.ethz.ch/R-CRAN/src/contrib/date_1.2-12.tar.gz
-Source8: ftp://stat.ethz.ch/R-CRAN/src/contrib/e1071_1.3-5.tar.gz
-Source9: ftp://stat.ethz.ch/R-CRAN/src/contrib/foreign_0.5-6.tar.gz
-Source10: ftp://stat.ethz.ch/R-CRAN/src/contrib/fracdiff_1.0-8.tar.gz
-Source11: ftp://stat.ethz.ch/R-CRAN/src/contrib/gee_4.13-10.tar.gz
-Source12: ftp://stat.ethz.ch/R-CRAN/src/contrib/grid_0.7-1.tar.gz
-Source13: ftp://stat.ethz.ch/R-CRAN/src/contrib/lattice_0.6-6.tar.gz
-Source14: ftp://stat.ethz.ch/R-CRAN/src/contrib/leaps_2.5.tar.gz
-Source15: ftp://stat.ethz.ch/R-CRAN/src/contrib/mgcv_0.8-6.tar.gz
-Source16: ftp://stat.ethz.ch/R-CRAN/src/contrib/mlbench_0.5-7.tar.gz
-Source17: ftp://stat.ethz.ch/R-CRAN/src/contrib/nlme_3.1-33.tar.gz
-Source18: ftp://stat.ethz.ch/R-CRAN/src/contrib/oz_1.0-6.tar.gz
-Source19: ftp://stat.ethz.ch/R-CRAN/src/contrib/polynom_1.1-10.tar.gz
-Source20: ftp://stat.ethz.ch/R-CRAN/src/contrib/princurve_1.1-5.tar.gz
-Source21: ftp://stat.ethz.ch/R-CRAN/src/contrib/quadprog_1.4-5.tar.gz
-Source22: ftp://stat.ethz.ch/R-CRAN/src/contrib/rpart_3.1-8.tar.gz
-Source23: ftp://stat.ethz.ch/R-CRAN/src/contrib/survival_2.9-6.tar.gz
-Source24: ftp://stat.ethz.ch/R-CRAN/src/contrib/xgobi_1.2-7.tar.gz
-Source25: ftp://stat.ethz.ch/R-CRAN/src/contrib/Archive/integrate_2.2-3.tar.gz
-Source26: %{name}.desktop
+Version: 2.2.1
+Release: 2
License: Mixed (distributable), mostly GPL
Group: Development/Languages
-URL: http://stat.auckland.ac.nz/r/r.html
-Provides: R-base R-contrib
+# CRAN master site: ftp://cran.r-project.org/pub/R/src/
+Source0: ftp://stat.ethz.ch/R-CRAN/src/base/R-2/%{name}-%{version}.tar.gz
+# Source0-md5: 42542290c6d1585af7ded330f811385c
+Source1: %{name}.desktop
+URL: http://www.r-project.org/
+BuildRequires: XFree86-devel
BuildRequires: autoconf
BuildRequires: automake
-BuildRequires: libstdc++-devel
+BuildRequires: blas-devel
+BuildRequires: bzip2-devel
BuildRequires: gcc-c++
BuildRequires: gcc-g77
-BuildRequires: perl >= 5.004
+BuildRequires: gettext-devel
+BuildRequires: libjpeg-devel >= 6b
+BuildRequires: libpng-devel >= 1.0.5
+BuildRequires: libstdc++-devel
BuildRequires: libtool
+BuildRequires: libxml-devel
+BuildRequires: perl-base >= 1:5.6
+BuildRequires: readline-devel
+BuildRequires: rpm-perlprov
+BuildRequires: tcl-devel
BuildRequires: tetex-latex
BuildRequires: tetex-dvips
BuildRequires: tetex-pdftex
+BuildRequires: tk-devel
BuildRequires: zip
-BuildRequires: XFree86-devel
-BuildRequires: blas-devel
-BuildRequires: libpng-devel >= 1.0.5
-BuildRequires: libjpeg-devel >= 6b
-BuildRequires: libxml-devel
BuildRequires: zlib >= 1.1.3
-BuildRequires: readline-devel
#BuildRequires: lpr
-%{!?_without_gnome:BuildRequires: gnome-libs-devel}
-%{!?_without_gnome:BuildRequires: ORBit-devel}
-%{!?_without_gnome:BuildRequires: libglade-gnome-devel}
+#Requires: lpr
+%{?with_gnome:BuildRequires: gnome-libs-devel}
+%{?with_gnome:BuildRequires: ORBit-devel}
+%{?with_gnome:BuildRequires: libglade-gnome-devel}
BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
%description
%package base
Summary: The R base distribution
Summary(pl): Podstawowa dystrybucja R
-Group: Development/Languages
-Provides: R-ctest R-eda R-lqs R-methods R-modreg R-mva R-nls R-splines
-Provides: R-stepfun R-tcltk R-tools R-ts
License: GPL v2 / LGPL
+Group: Development/Languages
+Requires(post): textutils
+Requires(post): perl-base
+Provides: R-cran-base
+Provides: R-cran-datasets
+Provides: R-cran-grid
+Provides: R-cran-graphics
+Provides: R-cran-grDevices
+Provides: R-cran-methods
+Provides: R-cran-utils
+Provides: R-cran-tcltk
+Provides: R-cran-splines
+Provides: R-cran-stats
+Provides: R-cran-stats4
+Provides: R-cran-tools
%description base
R is a language and run-time environment for carrying out interactive
Summary: Recommended contributed packages for the R language
Summary(pl): Zalecane dodatkowe pakiety do jêzyka R
Group: Development/Languages
-Provides: R-KernSmooth R-VR R-boot R-cluster R-foreign R-grid
-Provides: R-lattice R-mgcv R-nlme R-rpart R-survival
+Requires: R-cran-KernSmooth
+Requires: R-cran-VR
+Requires: R-cran-boot
+Requires: R-cran-cluster
+Requires: R-cran-foreign
+Requires: R-cran-lattice
+Requires: R-cran-mgcv
+Requires: R-cran-nlme
+Requires: R-cran-rpart
+Requires: R-cran-survival
License: GPL, free or free for non-commercial use
URL: http://www.ci.tuwien.ac.at/R/
-Requires: R-base >= %{version}
-Requires(post): R-base
-Requires(postun): R-base
-Obsoletes: R-survival4 R-MASS R-clus R-class R-nnet R-spatial
+Requires(post,postun): R-base
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Obsoletes: R-contrib
+Requires: R-base = %{version}-%{release}
%description recommended
Packages which extend the capabilities of the R base distribution and
Pakiety rozszerzaj±ce mo¿liwo¶ci podstawowej dystrybucji jêzyka R,
dystrubuowane w archiwum CRAN (Comprehensive R Archive Network).
-%package contrib
-Summary: Contributed packages for the R language
-Summary(pl): Dodatkowe pakiety do jêzyka R
-Group: Development/Languages
-Provides: R-acepack R-bootstrap R-date R-e1071 R-fracdiff R-gee
-Provides: R-integrate R-leaps R-oz R-polynom R-princurve R-quadprog
-Provides: R-xgobi
-License: Mixed
-URL: http://www.ci.tuwien.ac.at/R/
-Requires: R-base >= %{version}
-Requires: R-VR
-Requires(post): R-base
-Requires(postun): R-base
-Obsoletes: R-principal.curve
-
-%description contrib
-Packages which extend the capabilities of the R base distribution and
-are distributed on the Comprehensive R Archive Network (CRAN).
-
-%description contrib -l pl
-Pakiety rozszerzaj±ce mo¿liwo¶ci podstawowej dystrybucji jêzyka R,
-dystrubuowane w archiwum CRAN (Comprehensive R Archive Network).
-
-%package mlbench
-Summary: Machine learning benchmarks
-Summary(pl): Testy wydajno¶ci uczenia maszyny
-Group: Development/Languages
-License: GPL
-URL: http://www.ics.uci.edu/~mlearn/MLRepository.html
-Requires: R-base >= %{version}
-Requires(post): R-base
-Requires(postun): R-base
-
-%description mlbench
-R package which contains a collection of real-world datasets and
-functions for creating artificial datasets that work as benchmarks for
-machine learning methods.
-
-%description mlbench -l pl
-Ten podpakiet R zawiera zestaw rzeczywistych danych i funkcji do
-tworzenia sztucznych danych s³u¿±cych jako test wydajno¶ci metod
-uczenia maszyny.
-
%prep
-%setup -q -c -n R-cran -T -b 1
-%setup -q -c -n R-cran -T -D -b 2
-%setup -q -c -n R-cran -T -D -b 3
-%setup -q -c -n R-cran -T -D -b 4
-%setup -q -c -n R-cran -T -D -b 5
-%setup -q -c -n R-cran -T -D -b 6
-%setup -q -c -n R-cran -T -D -b 7
-%setup -q -c -n R-cran -T -D -b 8
-%setup -q -c -n R-cran -T -D -b 9
-%setup -q -c -n R-cran -T -D -b 10
-%setup -q -c -n R-cran -T -D -b 11
-%setup -q -c -n R-cran -T -D -b 12
-%setup -q -c -n R-cran -T -D -b 13
-%setup -q -c -n R-cran -T -D -b 14
-%setup -q -c -n R-cran -T -D -b 15
-%setup -q -c -n R-cran -T -D -b 16
-%setup -q -c -n R-cran -T -D -b 17
-%setup -q -c -n R-cran -T -D -b 18
-%setup -q -c -n R-cran -T -D -b 19
-%setup -q -c -n R-cran -T -D -b 20
-%setup -q -c -n R-cran -T -D -b 21
-%setup -q -c -n R-cran -T -D -b 22
-%setup -q -c -n R-cran -T -D -b 23
-%setup -q -c -n R-cran -T -D -b 24
-%setup -q -c -n R-cran -T -D -b 25
-%setup -q
-#%setup -q -T -D -a 14
+%setup -q
-# These files have the path for PERL hard-coded as /usr/local/bin/perl
+# These files have the path for Perl hard-coded as /usr/local/bin/perl
# We need to remove them to avoid dependency problems
-rm -f ./doc/keyword-test.orig ./etc/undoc/R-funs.orig ./etc/undoc/extrExamp.orig
+rm -f ./doc/keyword-test.orig ./etc/undoc/R-funs.orig ./etc/undoc/extrExamp.orig
%build
-%{__aclocal}
+%{__aclocal} -I m4
%{__autoconf}
cp -f /usr/share/automake/config.* .
%configure \
- %{!?_without_gnome:--with-gnome} \
- %{?_without_gnome:--without-gnome} \
- --without-tcltk
-
-%{__make}
+ --with%{!?with_gnome:out}-gnome \
+ --enable-R-shlib \
+ --enable-linux-lfs \
+ --with-zlib \
+ --with-bzlib \
+ --with-pcre \
+ --without-recommended-packages
+
+%{__make}
+%{__make} check
+%{__make} docs
%{__make} help
%{__make} html
-%{__make} clean
-
-# Install contrib packages
-#
-R_HOME=`pwd`;export R_HOME
-PERL5LIB=`pwd`/share/perl;export PERL5LIB
-cd ../R-cran
-for pkg in `ls`
-do
-${R_HOME}/bin/INSTALL ${pkg}
-done
-cd ${R_HOME}
-
-#Remove old template files.
-#
-for oldinfile in `find . -name '*.in' -print`
-do
- mv ${oldinfile} ${oldinfile}.old
-# rm ${oldinfile}
-done
-
-# Gather documentation from contrib packages in one directory
-# Assume that anything not in one of the standard directories is
-# documentation, and copy it.
-#
-mkdir ${R_HOME}/contrib
-cd ${RPM_BUILD_DIR}/R-cran
-for pkg in `ls`; do
- if [ -d ${pkg} ]; then
- mkdir ${R_HOME}/${pkg}
- for docfile in `ls ${pkg}`; do
- case $docfile in
- INDEX) ;;
- TITLE) ;;
- R) ;;
- man) ;;
- src) ;;
- src-c) ;;
- data) ;;
- *) cp -R -P ${pkg}/${docfile} ${R_HOME};;
- esac
- done
- fi
-done
-cd ${R_HOME}
+%{__make} info
%install
rm -rf $RPM_BUILD_ROOT
-install -d $RPM_BUILD_ROOT{%{_bindir},%{_mandir}/man1,%{_libdir}/R,%{_applnkdir}/Scientific/Numerics}
-
-install %{SOURCE26} $RPM_BUILD_ROOT%{_applnkdir}/Scientific/Numerics/%{name}.desktop
+install -d $RPM_BUILD_ROOT{%{_bindir},%{_mandir}/man1,%{_libdir}/R,%{_includedir},%{_desktopdir}}
-mv doc/R.1 $RPM_BUILD_ROOT%{_mandir}/man1/
-sed "s,`pwd`,%{_libdir}/R,g" < bin/R > bin/R. ; mv bin/R. bin/R
-mv bin/R $RPM_BUILD_ROOT%{_bindir}/R
+%{__make} install \
+ rhome=$RPM_BUILD_ROOT%{_libdir}/R \
+ mandir=$RPM_BUILD_ROOT%{_mandir} \
+ bindir=$RPM_BUILD_ROOT%{_bindir} \
+
-find . -name 'Makefile*' -exec rm -f {} \;
-rm -rf etc/*.old
+install %{SOURCE1} $RPM_BUILD_ROOT%{_desktopdir}
-cp -R AUTHORS afm bin doc etc include library modules share \
- $RPM_BUILD_ROOT%{_libdir}/R
+find $RPM_BUILD_ROOT%{_libdir}/R -name 'Makefile*' -exec rm -f {} \;
+mv $RPM_BUILD_ROOT%{_libdir}/R/lib/libR*.so $RPM_BUILD_ROOT%{_libdir}
+mv $RPM_BUILD_ROOT%{_libdir}/%{name}/include $RPM_BUILD_ROOT%{_includedir}/R
+ln -sf %{_includedir}/R $RPM_BUILD_ROOT%{_libdir}/R/include
+rm $RPM_BUILD_ROOT%{_bindir}/%{name}
+sed -i -e "s#$RPM_BUILD_ROOT##g" $RPM_BUILD_ROOT%{_libdir}/%{name}/bin/%{name}
+ln -sf %{_libdir}/%{name}/bin/%{name} $RPM_BUILD_ROOT%{_bindir}/%{name}
%clean
rm -rf $RPM_BUILD_ROOT
-%post base
-(cd %{_libdir}/R/library; cat */CONTENTS > ../doc/html/search/index.txt
+%post
+(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
+/sbin/ldconfig
-#%preun base
-## These files are not owned by any package, so we have to remove them
-## but only if this is the last version of R-base on the system.
-##
-#if [ "$1" = 0 ];
-#then
-# rm -f %{_libdir}/R/doc/html/search/index.txt
-# rm -f %{_libdir}/R/doc/html/packages.html
-#fi
-
-%post contrib
-(cd %{_libdir}/R/library; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-
-%postun contrib
-(cd %{_libdir}/R/library; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-
-%post recommended
-(cd %{_libdir}/R/library; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-
-%postun recommended
-(cd %{_libdir}/R/library; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-
-%post mlbench
-(cd %{_libdir}/R/library; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
-
-%postun mlbench
-(cd %{_libdir}/R/library; cat */CONTENTS > ../doc/html/search/index.txt
- R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
+%postun -p /sbin/ldconfig
%files base
%defattr(644,root,root,755)
+%doc COPYRIGHTS FAQ NEWS README RESOURCES THANKS Y2K
+
%{_mandir}/man1/R.1*
%attr(755,root,root) %{_bindir}/R
%dir %{_libdir}/R
-%{_libdir}/R/afm
%attr(755,root,root) %{_libdir}/R/bin
+%attr(755,root,root) %{_libdir}/libR*.so
%{_libdir}/R/etc
%{_libdir}/R/include
+%{_includedir}/R
%{_libdir}/R/share
%{_libdir}/R/AUTHORS
%dir %{_libdir}/R/library
-%{_libdir}/R/library/*.css
-%{_libdir}/R/library/base
-%{_libdir}/R/library/ctest
-%{_libdir}/R/library/eda
-%{_libdir}/R/library/lqs
-%{_libdir}/R/library/methods
-%{_libdir}/R/library/modreg
-%{_libdir}/R/library/mva
-%{_libdir}/R/library/nls
-%{_libdir}/R/library/splines
-%{_libdir}/R/library/stepfun
-%{_libdir}/R/library/tcltk
-%{_libdir}/R/library/tools
-%{_libdir}/R/library/ts
-%{_libdir}/R/modules
-%doc BUGS COPYRIGHTS FAQ NEWS README RESOURCES THANKS Y2K
# %{_libdir}/R/doc %except %{_libdir}/R/doc/html/{packages.html,search/index.txt}
%dir %{_libdir}/R/doc
%{_libdir}/R/doc/[KRm]*
%{_libdir}/R/doc/html/search/[A-Z]*
%ghost %{_libdir}/R/doc/html/search/index.txt
%ghost %{_libdir}/R/doc/html/packages.html
-%{_applnkdir}/Scientific/Numerics/*
+%{_desktopdir}/*
+
+%attr(755,root,root) %{_libdir}/%{name}/modules
+
+%{_libdir}/%{name}/library/base
+%{_libdir}/%{name}/library/datasets
+%{_libdir}/%{name}/library/grid
+%{_libdir}/%{name}/library/graphics
+%{_libdir}/%{name}/library/grDevices
+%{_libdir}/%{name}/library/methods
+%{_libdir}/%{name}/library/utils
+%{_libdir}/%{name}/library/tcltk
+%{_libdir}/%{name}/library/splines
+%{_libdir}/%{name}/library/stats
+%{_libdir}/%{name}/library/stats4
+%{_libdir}/%{name}/library/tools
%files recommended
-%defattr(644,root,root,755)
-%{_libdir}/R/library/MASS
-%{_libdir}/R/library/class
-%{_libdir}/R/library/nnet
-%{_libdir}/R/library/spatial
-%doc VR
-%{_libdir}/R/library/KernSmooth
-%doc KernSmooth
-%{_libdir}/R/library/boot
-%doc boot
-%{_libdir}/R/library/cluster
-%doc cluster
-%{_libdir}/R/library/foreign
-%doc foreign
-%{_libdir}/R/library/grid
-%doc grid
-%{_libdir}/R/library/lattice
-%doc lattice
-%{_libdir}/R/library/mgcv
-%doc mgcv
-%{_libdir}/R/library/nlme
-%doc nlme
-%{_libdir}/R/library/rpart
-%doc rpart
-%{_libdir}/R/library/survival
-%doc survival
-
-%files contrib
-%defattr(644,root,root,755)
-%{_libdir}/R/library/acepack
-%doc acepack
-%{_libdir}/R/library/bootstrap
-%doc bootstrap
-%{_libdir}/R/library/date
-%doc date
-%{_libdir}/R/library/e1071
-%doc e1071
-%{_libdir}/R/library/fracdiff
-%doc fracdiff
-%{_libdir}/R/library/gee
-%doc gee
-%{_libdir}/R/library/integrate
-%doc integrate
-%{_libdir}/R/library/leaps
-%doc leaps
-%{_libdir}/R/library/oz
-%doc oz
-%{_libdir}/R/library/polynom
-%doc polynom
-%{_libdir}/R/library/princurve
-%doc princurve
-%{_libdir}/R/library/quadprog
-%doc quadprog
-%{_libdir}/R/library/xgobi
-%doc xgobi
-
-%files mlbench
-%defattr(644,root,root,755)
-%{_libdir}/R/library/mlbench
-%doc mlbench
projects / packages / R.git / blobdiff