- up to 2.34.0

diff --git a/R-gcrma.spec b/R-gcrma.spec
index 3ad56e33649d15d3d3dc16efed93b6f9b4f29e07..b47ffe9ae7ad248980df7eead9b50137a0ba37c7 100644 (file)
--- a/R-gcrma.spec
+++ b/R-gcrma.spec
@@ -2,20 +2,22 @@
 
 Summary:       Background Adjustment Using Sequence Information
 Name:          R-%{packname}
-Version:       2.30.0
+Version:       2.34.0
 Release:       1
 License:       LGPL
 Group:         Applications/Engineering
 Source0:       http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
-# Source0-md5: 13a24a8182b435d538fc0abb67e47ebd
+# Source0-md5: 44f0435123c2a962914dc6737d6881c2
 Patch0:                bogus-deps.patch
 URL:           http://www.bioconductor.org/packages/release/bioc/html/gcrma.html
 BuildRequires: R-Biobase >= 2.5.5
 BuildRequires: R
+BuildRequires: R-XVector-devel
 BuildRequires: texlive-latex
 BuildRequires: texinfo
 Requires:      R-Biobase >= 2.5.5
 Requires:      R
+Requires:      R-XVector
 Requires:      texinfo
 BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
 

diff --git a/bogus-deps.patch b/bogus-deps.patch
index 78bfb24bb20571026a1ca2e9827706d3e188e610..223625f84e7fa82aab874696d120962277a5f0df 100644 (file)
--- a/bogus-deps.patch
+++ b/bogus-deps.patch
@@ -3,7 +3,7 @@
 @@ -11,7 +11,7 @@
  Depends: R (>= 2.6.0), affy (>= 1.23.2), graphics, methods, stats,
          utils
- Imports: Biobase, affy (>= 1.23.2), affyio (>= 1.13.3), IRanges,
+ Imports: Biobase, affy (>= 1.23.2), affyio (>= 1.13.3), XVector,
 -        Biostrings (>= 2.11.32), splines, BiocInstaller
 +        Biostrings (>= 2.11.32), splines
  Suggests: affydata, tools, splines, hgu95av2cdf, hgu95av2probe
@@ -17,6 +17,6 @@
  
 -importFrom(BiocInstaller, biocinstallRepos)
 -
- importFrom(IRanges, subseq, "subseq<-")
+ importFrom(XVector, subseq, "subseq<-")
  importClassesFrom(Biostrings, "DNAStringSet")
  importFrom(Biostrings, DNAStringSet, complement)