R-affyPLM.spec

   1 %define         packname        affyPLM
   2
   3 Summary:        Methods for fitting probe-level models
   4 Name:           R-%{packname}
   5 Version:        1.38.0
   6 Release:        1
   7 License:        LGPL v2+
   8 Group:          Applications/Engineering
   9 Source0:        http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  bffb6a94e493311a4cb0f9cc53b696e0
  11 Patch0:         bogus-deps.patch
  12 URL:            http://bioconductor.org/packages/release/bioc/html/affyPLM.html
  13 BuildRequires:  R
  14 BuildRequires:  R-Biobase
  15 BuildRequires:  R-BiocGenerics
  16 BuildRequires:  R-affy
  17 BuildRequires:  R-preprocessCore-devel
  18 BuildRequires:  R-gcrma
  19 BuildRequires:  texlive-latex
  20 Requires:       R
  21 Requires:       R-Biobase
  22 Requires:       R-BiocGenerics
  23 Requires:       R-affy
  24 Requires:       R-preprocessCore
  25 Suggests:       R-gcrma
  26 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  27
  28 %description
  29 A package that extends and improves the functionality of the base affy
  30 package. Routines that make heavy use of compiled code for speed.
  31 Central focus is on implementation of methods for fitting probe-level
  32 models and tools using these models. PLM based quality assessment
  33 tools.
  34
  35 %prep
  36 %setup -q -c -n %{packname}
  37 %patch0 -p1
  38
  39 %build
  40
  41 %install
  42 rm -rf $RPM_BUILD_ROOT
  43 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  44
  45 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  46
  47 %clean
  48 rm -rf $RPM_BUILD_ROOT
  49
  50 %files
  51 %defattr(644,root,root,755)
  52 %dir %{_libdir}/R/library/%{packname}
  53 %doc %{_libdir}/R/library/%{packname}/doc
  54 %doc %{_libdir}/R/library/%{packname}/html
  55 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  56 %doc %{_libdir}/R/library/%{packname}/CITATION
  57 %{_libdir}/R/library/%{packname}/INDEX
  58 %{_libdir}/R/library/%{packname}/NAMESPACE
  59 %{_libdir}/R/library/%{packname}/Meta
  60 %{_libdir}/R/library/%{packname}/R
  61 %{_libdir}/R/library/%{packname}/help
  62 %dir %{_libdir}/R/library/%{packname}/libs
  63 %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/affyPLM.so