- new, based on fedora

diff --git a/R-GenomicRanges.spec b/R-GenomicRanges.spec
new file mode 100644 (file)
index 0000000..c84e514
--- /dev/null
+++ b/R-GenomicRanges.spec
@@ -0,0 +1,59 @@
+%define                packname        GenomicRanges
+
+Summary:       Representation and manipulation of genomic intervals
+Name:          R-%{packname}
+Version:       1.10.2
+Release:       1
+License:       Artistic 2.0
+Group:         Applications/Math
+Source0:       http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: 04ab6f7c7a9abe309e586193e07415d0
+URL:           http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
+BuildRequires: R
+BuildRequires: R-BiocGenerics
+BuildRequires: R-IRanges-devel >= 1.11.26
+BuildRequires: texlive-latex
+Requires:      R
+Requires:      R-BiocGenerics
+Requires:      R-IRanges >= 1.11.26
+BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+The ability to efficiently store genomic annotations and alignments is
+playing a central role when it comes to analyze high-throughput
+sequencing data (a.k.a. NGS data). The package defines general purpose
+containers for storing genomic intervals as well as more specialized
+containers for storing alignments against a reference genome.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+# circular dep on R-Rsamtools
+#{_bindir}/R CMD build %{packname}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/doc/
+%doc %{_libdir}/R/library/%{packname}/html/
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/extdata/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/scripts/
+%{_libdir}/R/library/%{packname}/unitTests/
+%{_libdir}/R/library/%{packname}/libs/