R-BSgenome.Hsapiens.UCSC.hg19.spec

   1 # NOTE: this package is NoSource because the file is _enormous_,
   2 #       and I don't want to pollute distfiles with it - baggins
   3
   4 %define         packname        BSgenome.Hsapiens.UCSC.hg19
   5
   6 Summary:        Homo sapiens (Human) full genome (UCSC version hg19)
   7 Name:           R-%{packname}
   8 Version:        1.3.19
   9 Release:        1
  10 License:        Artistic 2.0
  11 Group:          Applications/Science
  12 Source0:        http://bioconductor.org/packages/release/data/annotation/src/contrib//%{packname}_%{version}.tar.gz
  13 # NoSource0-md5:        d8cc70ba24b9c320ca45c3dc56f5f9b2
  14 NoSource:       0
  15 URL:            http://bioconductor.org/packages/release/bioc/html/Biobase.html
  16 BuildRequires:  R
  17 BuildRequires:  R-BSgenome >= 1.25.4
  18 BuildRequires:  texlive-latex
  19 Requires:       R
  20 Requires:       R-BSgenome >= 1.25.4
  21 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  22
  23 %description
  24 Homo sapiens (Human) full genome as provided by UCSC (hg19, Feb. 2009)
  25 and stored in Biostrings objects.
  26
  27 %prep
  28 %setup -c -q -n %{packname}
  29
  30 %build
  31
  32 %install
  33 rm -rf $RPM_BUILD_ROOT
  34 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  35
  36 %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
  37
  38 %clean
  39 rm -rf $RPM_BUILD_ROOT
  40
  41 %files
  42 %defattr(644,root,root,755)
  43 %dir %{_libdir}/R/library/%{packname}
  44 %{_libdir}/R/library/%{packname}/INDEX
  45 %{_libdir}/R/library/%{packname}/Meta/
  46 %{_libdir}/R/library/%{packname}/R/
  47 %{_libdir}/R/library/%{packname}/help/
  48 %{_libdir}/R/library/%{packname}/libs/
  49 %{_libdir}/R/library/%{packname}/NAMESPACE
  50 %{_libdir}/R/library/%{packname}/UnitTests/
  51 %{_libdir}/R/library/%{packname}/data
  52 %{_libdir}/R/library/%{packname}/scripts
  53 %{_libdir}/R/library/%{packname}/ExpressionSet
  54 %{_libdir}/R/library/%{packname}/CITATION
  55 %{_libdir}/R/library/%{packname}/Code
  56 %{_libdir}/R/library/%{packname}/extdata
  57 %{_libdir}/R/library/%{packname}/testClass.R
  58 %{_libdir}/R/library/%{packname}/NEWS
  59 %doc %{_libdir}/R/library/%{packname}/doc
  60 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  61 %doc %{_libdir}/R/library/%{packname}/html