projects / packages / MACS.git / blame
| Commit | Line | Data |
|---|---|---|
| cdb483ef JR |
1 | Summary: Model-based Analysis for ChIP-Seq |
| 2 | #Summary(pl.UTF-8): - | |
| 3 | Name: MACS | |
| 4 | Version: 1.4.1 | |
| 5 | Release: 1 | |
| 6 | License: Artistic | |
| 7 | Group: Development/Languages/Python | |
| 8 | # user and password are "publicly" visible on the web page (ROT13) | |
| 9 | Source0: http://macs:chipseq@liulab.dfci.harvard.edu/MACS/src/%{name}-%{version}.tar.gz | |
| 10 | # Source0-md5: 0b6490e37265d485e387b8323e810d3d | |
| 11 | URL: http://liulab.dfci.harvard.edu/MACS/ | |
| 12 | BuildRequires: python-distribute | |
| 13 | BuildRequires: rpm-pythonprov | |
| ccdb66c6 | 14 | BuildRequires: rpmbuild(macros) >= 1.710 |
| cdb483ef JR |
15 | Requires: python-modules |
| 16 | BuildArch: noarch | |
| 17 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 18 | ||
| 19 | %description | |
| 20 | Next generation parallel sequencing technologies made chromatin | |
| 21 | immunoprecipitation followed by sequencing (ChIP-Seq) a popular | |
| 22 | strategy to study genome-wide protein-DNA interactions, while | |
| 23 | creating challenges for analysis algorithms. We present Model-based | |
| 24 | Analysis of ChIP-Seq (MACS) on short reads sequencers such as Genome | |
| 25 | Analyzer (Illumina / Solexa). MACS empirically models the length of | |
| 26 | the sequenced ChIP fragments, which tends to be shorter than | |
| 27 | sonication or library construction size estimates, and uses it | |
| 28 | to improve the spatial resolution of predicted binding sites. | |
| 29 | MACS also uses a dynamic Poisson distribution to effectively capture | |
| 30 | local biases in the genome sequence, allowing for more sensitive and | |
| 31 | robust prediction. MACS compares favorably to existing ChIP-Seq | |
| 32 | peak-finding algorithms, is publicly available open source, and can be | |
| 33 | used for ChIP-Seq with or without control samples. | |
| 34 | ||
| 35 | #%description -l pl.UTF-8 | |
| 36 | ||
| 37 | %prep | |
| 38 | %setup -q | |
| 39 | ||
| 40 | # fix #!/usr/bin/env python -> #!/usr/bin/python: | |
| 41 | %{__sed} -i -e '1s,^#!.*python,#!%{__python},' bin/* setup.py | |
| 42 | ||
| 43 | %build | |
| 56d39876 | 44 | %py_build |
| cdb483ef JR |
45 | |
| 46 | %install | |
| 47 | rm -rf $RPM_BUILD_ROOT | |
| 56d39876 | 48 | %py_install |
| cdb483ef JR |
49 | |
| 50 | %py_ocomp $RPM_BUILD_ROOT%{py_sitescriptdir} | |
| 51 | %py_comp $RPM_BUILD_ROOT%{py_sitescriptdir} | |
| 52 | %py_postclean | |
| 53 | ||
| 54 | %clean | |
| 55 | rm -rf $RPM_BUILD_ROOT | |
| 56 | ||
| 57 | %files | |
| 58 | %defattr(644,root,root,755) | |
| 59 | %doc ChangeLog NEW_IN_MACS14 README | |
| 60 | %attr(755,root,root) %{_bindir}/* | |
| 61 | %dir %{py_sitescriptdir}/MACS14 | |
| 62 | %dir %{py_sitescriptdir}/MACS14/IO | |
| 63 | %{py_sitescriptdir}/MACS14/*.py[co] | |
| 64 | %{py_sitescriptdir}/MACS14/IO/*.py[co] | |
| 65 | %if "%{py_ver}" > "2.4" | |
| 66 | %{py_sitescriptdir}/MACS-*.egg-info | |
| 67 | %endif |