- up to 1.22.0

[packages/R-rtracklayer.git] / bogus-deps.patch

diff --git a/bogus-deps.patch b/bogus-deps.patch
index 9bf0a49bc7fd9cba79d0d28aabbd2224f35c3f84..849ce2e369b5b874e089a30edb99b1a88f31f374 100644 (file)
--- a/bogus-deps.patch
+++ b/bogus-deps.patch
@@ -1,14 +1,14 @@
 --- rtracklayer/rtracklayer/DESCRIPTION~       2013-05-04 06:57:13.000000000 +0200
 +++ rtracklayer/rtracklayer/DESCRIPTION        2013-05-10 14:37:24.622975892 +0200
 @@ -5,7 +5,7 @@
- Depends: R (>= 2.10), methods, GenomicRanges (>= 1.11.12)
- Imports: XML (>= 1.98-0), BiocGenerics (>= 0.1.0), IRanges (>=
-         1.15.37), GenomicRanges, Biostrings (>= 2.25.6), BSgenome (>=
--        1.23.1), zlibbioc, RCurl (>= 1.4-2), Rsamtools (>= 1.7.3)
-+        1.23.1), RCurl (>= 1.4-2), Rsamtools (>= 1.7.3)
+ Depends: R (>= 2.10), methods, GenomicRanges (>= 1.13.3)
+ Imports: XML (>= 1.98-0), BiocGenerics (>= 0.7.7), IRanges (>=
+         1.19.34), XVector (>= 0.1.3), GenomicRanges (>= 1.13.43),
+-        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), zlibbioc, RCurl
++        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), RCurl
+         (>= 1.4-2), Rsamtools (>= 1.13.1)
  Suggests: humanStemCell, microRNA (>= 1.1.1), genefilter, limma,
          org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
-         TxDb.Hsapiens.UCSC.hg19.knownGene, hgu133plus2.db
 --- rtracklayer/rtracklayer/NAMESPACE~ 2013-05-04 02:02:40.000000000 +0200
 +++ rtracklayer/rtracklayer/NAMESPACE  2013-05-10 14:37:38.086445477 +0200
 @@ -1,7 +1,5 @@