- up to 1.22.0

diff --git a/R-rtracklayer.spec b/R-rtracklayer.spec
index 98949c91f1e6e0f3c9ae743aff711afc8ad15071..97cfd5642dcd0b7fc7afc423865076569e2270bf 100644 (file)
--- a/R-rtracklayer.spec
+++ b/R-rtracklayer.spec
@@ -2,14 +2,14 @@
 
 Summary:       R interface to genome browsers and their annotation tracks
 Name:          R-%{packname}
-Version:       1.20.2
+Version:       1.22.0
 Release:       1
 License:       Artistic 2.0
 Group:         Applications/Engineering
 Source0:       http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
-# Source0-md5: 04d4c40bba7adb50721c6ad256c854a7
+# Source0-md5: 1dad994b4779769e935902e9c8384959
 Patch0:                bogus-deps.patch
-URL:           http://www.bioconductor.org/packages/2.12/bioc/html/rtracklayer.html
+URL:           http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html
 BuildRequires: R
 BuildRequires: R-GenomicRanges >= 1.11.12
 BuildRequires: R-BSgenome

diff --git a/bogus-deps.patch b/bogus-deps.patch
index 9bf0a49bc7fd9cba79d0d28aabbd2224f35c3f84..849ce2e369b5b874e089a30edb99b1a88f31f374 100644 (file)
--- a/bogus-deps.patch
+++ b/bogus-deps.patch
@@ -1,14 +1,14 @@
 --- rtracklayer/rtracklayer/DESCRIPTION~       2013-05-04 06:57:13.000000000 +0200
 +++ rtracklayer/rtracklayer/DESCRIPTION        2013-05-10 14:37:24.622975892 +0200
 @@ -5,7 +5,7 @@
- Depends: R (>= 2.10), methods, GenomicRanges (>= 1.11.12)
- Imports: XML (>= 1.98-0), BiocGenerics (>= 0.1.0), IRanges (>=
-         1.15.37), GenomicRanges, Biostrings (>= 2.25.6), BSgenome (>=
--        1.23.1), zlibbioc, RCurl (>= 1.4-2), Rsamtools (>= 1.7.3)
-+        1.23.1), RCurl (>= 1.4-2), Rsamtools (>= 1.7.3)
+ Depends: R (>= 2.10), methods, GenomicRanges (>= 1.13.3)
+ Imports: XML (>= 1.98-0), BiocGenerics (>= 0.7.7), IRanges (>=
+         1.19.34), XVector (>= 0.1.3), GenomicRanges (>= 1.13.43),
+-        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), zlibbioc, RCurl
++        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), RCurl
+         (>= 1.4-2), Rsamtools (>= 1.13.1)
  Suggests: humanStemCell, microRNA (>= 1.1.1), genefilter, limma,
          org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
-         TxDb.Hsapiens.UCSC.hg19.knownGene, hgu133plus2.db
 --- rtracklayer/rtracklayer/NAMESPACE~ 2013-05-04 02:02:40.000000000 +0200
 +++ rtracklayer/rtracklayer/NAMESPACE  2013-05-10 14:37:38.086445477 +0200
 @@ -1,7 +1,5 @@