+# TODO:
+# - move perl R libraries to standard perl location
+# - script for rpm to autoprovides/autorequires R internals
#
# Conditional build:
-# _without_gnome - without gnome support
+%bcond_without gnome # without GNOME support
#
+%include /usr/lib/rpm/macros.perl
Summary: A language for data analysis and graphics
Summary(pl): Jêzyk do analizy danych oraz grafiki
Name: R
-Version: 1.4.0
+Version: 2.2.1
Release: 1
-Source0: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/base/%{name}-%{version}.tgz
-Source1: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/mlbench_0.5-4.tar.gz
-Source2: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/VR_6.3-1.tar.gz
-Source3: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/acepack_1.3.tar.gz
-Source4: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/bootstrap_1.0-9.tar.gz
-Source5: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/cluster_1.3-6.tar.gz
-Source6: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/date_1.2-11.tar.gz
-Source7: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/e1071_1.2-1.tar.gz
-Source8: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/fracdiff_1.0-7.tar.gz
-Source9: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/gee_4.13-6.tar.gz
-#Source10: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/integrate_2.2-3.tar.gz
-# Source11: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/jpn_1.0-1.tar.gz
-Source12: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/leaps_2.1-1.tar.gz
-Source13: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/oz_1.0-6.tar.gz
-Source14: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/polynom_1.1-8.tar.gz
-Source15: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/princurve_1.1-3.tar.gz
-Source16: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/quadprog_1.4-3.tar.gz
-# Source17: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/ratetables_1.0-2.tar.gz
-# Source18: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/rational_1.0-1.tar.gz
-Source19: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/survival_2.6.tar.gz
-Source20: ftp://ftp.stat.math.ethz.ch/R-CRAN/src/contrib/xgobi_1.2-5.tar.gz
-Patch0: R-destdir.patch
-# Patch0: %{name}-0.61.rpm.patch3
-License: GPL
+License: Mixed (distributable), mostly GPL
Group: Development/Languages
-Group(de): Entwicklung/Sprachen
-Group(pl): Programowanie/Jêzyki
-URL: http://stat.auckland.ac.nz/r/r.html
-Provides: R-base R-contrib
-BuildRequires: libstdc++-devel
+# CRAN master site: ftp://cran.r-project.org/pub/R/src/
+Source0: ftp://stat.ethz.ch/R-CRAN/src/base/R-2/%{name}-%{version}.tar.gz
+# Source0-md5: 42542290c6d1585af7ded330f811385c
+Source1: %{name}.desktop
+URL: http://www.r-project.org/
+BuildRequires: XFree86-devel
+BuildRequires: autoconf
+BuildRequires: automake
+BuildRequires: blas-devel
+BuildRequires: bzip2-devel
BuildRequires: gcc-c++
BuildRequires: gcc-g77
-BuildRequires: perl >= 5
+BuildRequires: gettext-devel
+BuildRequires: libjpeg-devel >= 6b
+BuildRequires: libpng-devel >= 1.0.5
+BuildRequires: libstdc++-devel
BuildRequires: libtool
+BuildRequires: libxml-devel
+BuildRequires: perl-base >= 1:5.6
+BuildRequires: readline-devel
+BuildRequires: rpm-perlprov
+BuildRequires: tcl-devel
BuildRequires: tetex-latex
BuildRequires: tetex-dvips
BuildRequires: tetex-pdftex
+BuildRequires: tk-devel
BuildRequires: zip
-BuildRequires: XFree86-devel
-BuildRequires: libpng-devel >= 1.0.5
-BuildRequires: libjpeg-devel >= 6b
-BuildRequires: libxml-devel
BuildRequires: zlib >= 1.1.3
-BuildRequires: readline-devel
#BuildRequires: lpr
-%{!?_without_gnome:BuildRequires: gnome-libs-devel}
-%{!?_without_gnome:BuildRequires: ORBit-devel}
-%{!?_without_gnome:BuildRequires: libglade-devel}
+#Requires: lpr
+%{?with_gnome:BuildRequires: gnome-libs-devel}
+%{?with_gnome:BuildRequires: ORBit-devel}
+%{?with_gnome:BuildRequires: libglade-gnome-devel}
BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
%description
%package base
Summary: The R base distribution
Summary(pl): Podstawowa dystrybucja R
+License: GPL v2 / LGPL
Group: Development/Languages
-Group(de): Entwicklung/Sprachen
-Group(pl): Programowanie/Jêzyki
-Provides: R-acepack R-bootstrap R-VR R-cluster R-ctest R-date R-e1071
-Provides: R-fracdiff R-gee R-integrate R-jpn R-leaps R-mlbench R-oz
-Provides: R-polynom R-princurve R-quadprog R-ratetables R-rational
-Provides: R-splines R-survival R-xgobi
-Obsoletes: R-principal.curve R-survival4 R-clus R-class R-nnet R-spatial
+Requires(post): textutils
+Requires(post): perl-base
+Provides: R-cran-base
+Provides: R-cran-datasets
+Provides: R-cran-grid
+Provides: R-cran-graphics
+Provides: R-cran-grDevices
+Provides: R-cran-methods
+Provides: R-cran-utils
+Provides: R-cran-tcltk
+Provides: R-cran-splines
+Provides: R-cran-stats
+Provides: R-cran-stats4
+Provides: R-cran-tools
%description base
R is a language and run-time environment for carrying out interactive
mimo to u¿ytkownicy S zauwa¿± zbli¿one ¶rodowisko, a du¿a czê¶æ
oprogramowania w S bêdzie dzia³a³a bez zmian w R.
-%package contrib
-Summary: Contributed packages for the R language
-Summary(pl): Dodatkowe pakiety do jêzyka R
+%package recommended
+Summary: Recommended contributed packages for the R language
+Summary(pl): Zalecane dodatkowe pakiety do jêzyka R
Group: Development/Languages
-Group(de): Entwicklung/Sprachen
-Group(pl): Programowanie/Jêzyki
-License: Mixed
+Requires: R-cran-KernSmooth
+Requires: R-cran-VR
+Requires: R-cran-boot
+Requires: R-cran-cluster
+Requires: R-cran-foreign
+Requires: R-cran-lattice
+Requires: R-cran-mgcv
+Requires: R-cran-nlme
+Requires: R-cran-rpart
+Requires: R-cran-survival
+License: GPL, free or free for non-commercial use
URL: http://www.ci.tuwien.ac.at/R/
-Requires: R-base >= %{version}
+Requires(post,postun): R-base
+Requires(post,postun): perl-base
+Requires(post,postun): textutils
+Obsoletes: R-contrib
+Requires: R-base = %{version}-%{release}
-%description contrib
+%description recommended
Packages which extend the capabilities of the R base distribution and
are distributed on the Comprehensive R Archive Network (CRAN).
-%description contrib -l pl
+%description recommended -l pl
Pakiety rozszerzaj±ce mo¿liwo¶ci podstawowej dystrybucji jêzyka R,
dystrubuowane w archiwum CRAN (Comprehensive R Archive Network).
-%package mlbench
-Summary: Machine learning benchmarks
-Summary(pl): Testy wydajno¶ci uczenia maszyny
-Group: Development/Languages
-Group(de): Entwicklung/Sprachen
-Group(pl): Programowanie/Jêzyki
-License: GPL
-URL: http://www.ics.uci.edu/~mlearn/MLRepository.html
-Requires: R-base >= %{version}
-
-%description mlbench
-R package which contains a collection of real-world datasets and
-functions for creating artificial datasets that work as benchmarks for
-machine learning methods.
-
-%description mlbench -l pl
-Ten podpakiet R zawiera zestaw rzeczywistych danych i funkcji do
-zrobienia sztucznych danych dzia³aj±cych jako test wydajno¶ci metod
-uczenia maszyny.
-
%prep
-%setup -q -c -n R-cran -T -b 2
-%setup -q -c -n R-cran -T -D -b 3
-%setup -q -c -n R-cran -T -D -b 4
-%setup -q -c -n R-cran -T -D -b 5
-%setup -q -c -n R-cran -T -D -b 6
-%setup -q -c -n R-cran -T -D -b 7
-%setup -q -c -n R-cran -T -D -b 8
-%setup -q -c -n R-cran -T -D -b 9
-#%setup -q -c -n R-cran -T -D -b 10
-# %setup -q -c -n R-cran -T -D -b 11
-%setup -q -c -n R-cran -T -D -b 12
-%setup -q -c -n R-cran -T -D -b 13
-%setup -q -c -n R-cran -T -D -b 14
-%setup -q -c -n R-cran -T -D -b 15
-%setup -q -c -n R-cran -T -D -b 16
-# %setup -q -c -n R-cran -T -D -b 17
-# %setup -q -c -n R-cran -T -D -b 18
-%setup -q -c -n R-cran -T -D -b 19
-%setup -q -c -n R-cran -T -D -b 20
-%setup -q
-%setup -q -T -D -a 1
-%patch0 -p0
-# %patch0 -p1
-# These files have the path for PERL hard-coded as /usr/local/bin/perl
+%setup -q
+
+# These files have the path for Perl hard-coded as /usr/local/bin/perl
# We need to remove them to avoid dependency problems
-rm -f ./doc/keyword-test.orig ./etc/undoc/R-funs.orig ./etc/undoc/extrExamp.orig
+rm -f ./doc/keyword-test.orig ./etc/undoc/R-funs.orig ./etc/undoc/extrExamp.orig
%build
-%configure2_13 \
- %{!?_without_gnome:--with-gnome} \
- %{?_without_gnome:--without-gnome} \
- --without-tcltk
-
-%{__make}
+%{__aclocal} -I m4
+%{__autoconf}
+cp -f /usr/share/automake/config.* .
+%configure \
+ --with%{!?with_gnome:out}-gnome \
+ --enable-R-shlib \
+ --enable-linux-lfs \
+ --with-zlib \
+ --with-bzlib \
+ --with-pcre \
+ --without-recommended-packages
+
+%{__make}
+%{__make} check
+%{__make} docs
%{__make} help
%{__make} html
-%{__make} clean
-# %{__make} acclean
-
-# Install contrib packages
-#
-R_HOME=`pwd`;export R_HOME
-PERL5LIB=`pwd`/share/perl;export PERL5LIB
-cd ../R-cran
-for pkg in `ls`
-do
-${R_HOME}/bin/INSTALL ${pkg}
-done
-cd ${R_HOME}
-
-# Install mlbench
-#
-${R_HOME}/bin/INSTALL mlbench
-
-#Remove old template files.
-#
-for oldinfile in `find . -name '*.in' -print`
-do
- mv ${oldinfile} ${oldinfile}.old
-# rm ${oldinfile}
-done
-
-# Gather documentation from contrib packages in one directory
-# Assume that anything not in one of the standard directories is
-# documentation, and copy it.
-#
-mkdir ${R_HOME}/contrib
-cd ${RPM_BUILD_DIR}/R-cran
-for pkg in `ls`; do
- if [ -d ${pkg} ]; then
- mkdir ${R_HOME}/${pkg}
- for docfile in `ls ${pkg}`; do
- case $docfile in
- INDEX) ;;
- TITLE) ;;
- R) ;;
- man) ;;
- src) ;;
- src-c) ;;
- data) ;;
- *) cp -R -P ${pkg}/${docfile} ${R_HOME};;
- esac
- done
- fi
-done
-cd ${R_HOME}
+%{__make} info
%install
rm -rf $RPM_BUILD_ROOT
-install -d ${RPM_BUILD_ROOT}%{_mandir}/man1
-install doc/R.1 ${RPM_BUILD_ROOT}%{_mandir}/man1/
-install -d ${RPM_BUILD_ROOT}%{_libdir}/R
-# cp -R afm bin cmd demos doc etc html include library ${RPM_BUILD_ROOT}%{_libdir}/R
-cp -R afm bin doc etc include library modules ${RPM_BUILD_ROOT}%{_libdir}/R
-install -d ${RPM_BUILD_ROOT}%{_bindir}
-install -m 755 bin/R ${RPM_BUILD_ROOT}%{_bindir}/R
+install -d $RPM_BUILD_ROOT{%{_bindir},%{_mandir}/man1,%{_libdir}/R,%{_includedir},%{_desktopdir}}
-%clean
-# rm -rf $RPM_BUILD_ROOT
+%{__make} install \
+ rhome=$RPM_BUILD_ROOT%{_libdir}/R \
+ mandir=$RPM_BUILD_ROOT%{_mandir} \
+ bindir=$RPM_BUILD_ROOT%{_bindir} \
+
-%post base
-(cd %{_libdir}/R/library; cat */TITLE > LibIndex; ../etc/build-htmlpkglist)
+install %{SOURCE1} $RPM_BUILD_ROOT%{_desktopdir}
-%preun base
-# These files are not owned by any package, so we have to remove them
-# but only if this is the last version of R-base on the system.
-#
-if [ "$1" = 0 ];
-then
- rm -f %{_libdir}/R/library/LibIndex
- rm -f %{_libdir}/R/library/index.html
-fi
-
-%post contrib
-(cd %{_libdir}/R/library; cat */TITLE > LibIndex; ../etc/build-htmlpkglist)
+find $RPM_BUILD_ROOT%{_libdir}/R -name 'Makefile*' -exec rm -f {} \;
+mv $RPM_BUILD_ROOT%{_libdir}/R/lib/libR*.so $RPM_BUILD_ROOT%{_libdir}
+mv $RPM_BUILD_ROOT%{_libdir}/%{name}/include $RPM_BUILD_ROOT%{_includedir}/R
+ln -sf %{_includedir}/R $RPM_BUILD_ROOT%{_libdir}/R/include
+rm $RPM_BUILD_ROOT%{_bindir}/%{name}
+sed -i -e "s#$RPM_BUILD_ROOT##g" $RPM_BUILD_ROOT%{_libdir}/%{name}/bin/%{name}
+ln -sf %{_libdir}/%{name}/bin/%{name} $RPM_BUILD_ROOT%{_bindir}/%{name}
-%postun contrib
-(cd %{_libdir}/R/library; cat */TITLE > LibIndex; ../etc/build-htmlpkglist)
+%clean
+rm -rf $RPM_BUILD_ROOT
-%post mlbench
-(cd %{_libdir}/R/library; cat */TITLE > LibIndex; ../etc/build-htmlpkglist)
+%post
+(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
+ R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
+/sbin/ldconfig
-%postun mlbench
-(cd %{_libdir}/R/library; cat */TITLE > LibIndex; ../etc/build-htmlpkglist)
+%postun -p /sbin/ldconfig
%files base
%defattr(644,root,root,755)
-%attr(-,root,root) %{_mandir}/man1/R.1*
-%attr(-,root,root) %{_bindir}/R
-%attr(-,root,root) %dir %{_libdir}/R
-%attr(-,root,root) %{_libdir}/R/afm
-%attr(-,root,root) %{_libdir}/R/bin
-# %attr(-,root,root) %{_libdir}/R/cmd
-# %attr(-,root,root) %{_libdir}/R/demos
-%attr(-,root,root) %{_libdir}/R/etc
-%attr(-,root,root) %{_libdir}/R/include
-%attr(-,root,root) %dir %{_libdir}/R/library
-%attr(-,root,root) %{_libdir}/R/library/base/
-%attr(-,root,root) %{_libdir}/R/library/ctest
-%attr(-,root,root) %{_libdir}/R/library/eda/
-%attr(-,root,root) %{_libdir}/R/library/mva/
-%attr(-,root,root) %{_libdir}/R/library/splines
-%attr(-,root,root) %{_libdir}/R/library/stepfun/
-%attr(-,root,root) %{_libdir}/R/modules
-%attr(-,root,root) %doc CHANGES COPYING COPYRIGHTS MIRROR-SITES PROJECTS README RESOURCES TASKS
-%attr(-,root,root) %doc html
-
-%files contrib
-%defattr(644,root,root,755)
-%attr(-,root,root) %{_libdir}/R/library/MASS
-%attr(-,root,root) %{_libdir}/R/library/class
-%attr(-,root,root) %{_libdir}/R/library/spatial
-%attr(-,root,root) %{_libdir}/R/library/nnet
-%attr(-,root,root) %doc VR
-%attr(-,root,root) %{_libdir}/R/library/acepack
-%attr(-,root,root) %doc acepack
-%attr(-,root,root) %{_libdir}/R/library/bootstrap
-%attr(-,root,root) %doc bootstrap
-%attr(-,root,root) %{_libdir}/R/library/cluster
-%attr(-,root,root) %doc cluster
-%attr(-,root,root) %{_libdir}/R/library/date
-%attr(-,root,root) %doc date
-%attr(-,root,root) %{_libdir}/R/library/e1071
-%attr(-,root,root) %doc e1071
-%attr(-,root,root) %{_libdir}/R/library/fracdiff
-%attr(-,root,root) %doc fracdiff
-%attr(-,root,root) %{_libdir}/R/library/gee
-%attr(-,root,root) %doc gee
-%attr(-,root,root) %{_libdir}/R/library/integrate
-%attr(-,root,root) %doc integrate
-# %attr(-,root,root) %{_libdir}/R/library/jpn
-# %attr(-,root,root) %doc jpn
-%attr(-,root,root) %{_libdir}/R/library/leaps
-%attr(-,root,root) %doc leaps
-%attr(-,root,root) %{_libdir}/R/library/oz
-%attr(-,root,root) %doc oz
-%attr(-,root,root) %{_libdir}/R/library/polynom
-%attr(-,root,root) %doc polynom
-%attr(-,root,root) %{_libdir}/R/library/princurve
-%attr(-,root,root) %doc princurve
-%attr(-,root,root) %{_libdir}/R/library/quadprog
-%attr(-,root,root) %doc quadprog
-# %attr(-,root,root) %{_libdir}/R/library/ratetables
-# %attr(-,root,root) %doc ratetables
-# %attr(-,root,root) %{_libdir}/R/library/rational
-# %attr(-,root,root) %doc rational
-%attr(-,root,root) %{_libdir}/R/library/survival
-%attr(-,root,root) %doc survival
-%attr(-,root,root) %{_libdir}/R/library/xgobi
-%attr(-,root,root) %doc xgobi
-
-%files mlbench
-%defattr(644,root,root,755)
-%attr(-,root,root) %{_libdir}/R/library/mlbench
-%attr(-,root,root) %doc mlbench/COPYRIGHT
-%attr(-,root,root) %doc mlbench/ChangeLog
-%attr(-,root,root) %doc mlbench/README
+%doc COPYRIGHTS FAQ NEWS README RESOURCES THANKS Y2K
+
+%{_mandir}/man1/R.1*
+%attr(755,root,root) %{_bindir}/R
+%dir %{_libdir}/R
+%attr(755,root,root) %{_libdir}/R/bin
+%attr(755,root,root) %{_libdir}/libR*.so
+%{_libdir}/R/etc
+%{_libdir}/R/include
+%{_includedir}/R
+%{_libdir}/R/share
+%{_libdir}/R/AUTHORS
+%dir %{_libdir}/R/library
+# %{_libdir}/R/doc %except %{_libdir}/R/doc/html/{packages.html,search/index.txt}
+%dir %{_libdir}/R/doc
+%{_libdir}/R/doc/[KRm]*
+%dir %{_libdir}/R/doc/html
+%{_libdir}/R/doc/html/*.css
+%{_libdir}/R/doc/html/[Ra-lr-u]*.html
+%{_libdir}/R/doc/html/packages-head.html
+%{_libdir}/R/doc/html/*.jpg
+%dir %{_libdir}/R/doc/html/search
+%{_libdir}/R/doc/html/search/[A-Z]*
+%ghost %{_libdir}/R/doc/html/search/index.txt
+%ghost %{_libdir}/R/doc/html/packages.html
+%{_desktopdir}/*
+
+%attr(755,root,root) %{_libdir}/%{name}/modules
+
+%{_libdir}/%{name}/library/base
+%{_libdir}/%{name}/library/datasets
+%{_libdir}/%{name}/library/grid
+%{_libdir}/%{name}/library/graphics
+%{_libdir}/%{name}/library/grDevices
+%{_libdir}/%{name}/library/methods
+%{_libdir}/%{name}/library/utils
+%{_libdir}/%{name}/library/tcltk
+%{_libdir}/%{name}/library/splines
+%{_libdir}/%{name}/library/stats
+%{_libdir}/%{name}/library/stats4
+%{_libdir}/%{name}/library/tools
+
+%files recommended
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