projects / packages / R-BSgenome.Hsapiens.UCSC.hg19.git / blame
| Commit | Line | Data |
|---|---|---|
| cc8aff61 JR |
1 | # NOTE: this package is NoSource because the file is _enormous_, |
| 2 | # and I don't want to pollute distfiles with it - baggins | |
| 3 | ||
| 4 | %define packname BSgenome.Hsapiens.UCSC.hg19 | |
| 5 | ||
| 6 | Summary: Homo sapiens (Human) full genome (UCSC version hg19) | |
| 7 | Name: R-%{packname} | |
| 8 | Version: 1.3.19 | |
| 9 | Release: 1 | |
| 10 | License: Artistic 2.0 | |
| 11 | Group: Applications/Science | |
| 12 | Source0: http://bioconductor.org/packages/release/data/annotation/src/contrib//%{packname}_%{version}.tar.gz | |
| 13 | # NoSource0-md5: d8cc70ba24b9c320ca45c3dc56f5f9b2 | |
| 14 | NoSource: 0 | |
| 15 | URL: http://bioconductor.org/packages/release/bioc/html/Biobase.html | |
| 16 | BuildRequires: R | |
| 17 | BuildRequires: R-BSgenome >= 1.25.4 | |
| 18 | BuildRequires: texlive-latex | |
| 19 | Requires: R | |
| 20 | Requires: R-BSgenome >= 1.25.4 | |
| 21 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 22 | ||
| 23 | %description | |
| 24 | Homo sapiens (Human) full genome as provided by UCSC (hg19, Feb. 2009) | |
| 25 | and stored in Biostrings objects. | |
| 26 | ||
| 27 | %prep | |
| 28 | %setup -c -q -n %{packname} | |
| 29 | ||
| 30 | %build | |
| 31 | ||
| 32 | %install | |
| 33 | rm -rf $RPM_BUILD_ROOT | |
| 34 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 35 | ||
| 36 | %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname} | |
| 37 | ||
| 38 | %clean | |
| 39 | rm -rf $RPM_BUILD_ROOT | |
| 40 | ||
| 41 | %files | |
| 42 | %defattr(644,root,root,755) | |
| 43 | %dir %{_libdir}/R/library/%{packname} | |
| 44 | %{_libdir}/R/library/%{packname}/INDEX | |
| 45 | %{_libdir}/R/library/%{packname}/Meta/ | |
| 46 | %{_libdir}/R/library/%{packname}/R/ | |
| 47 | %{_libdir}/R/library/%{packname}/help/ | |
| 48 | %{_libdir}/R/library/%{packname}/libs/ | |
| 49 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 50 | %{_libdir}/R/library/%{packname}/UnitTests/ | |
| 51 | %{_libdir}/R/library/%{packname}/data | |
| 52 | %{_libdir}/R/library/%{packname}/scripts | |
| 53 | %{_libdir}/R/library/%{packname}/ExpressionSet | |
| 54 | %{_libdir}/R/library/%{packname}/CITATION | |
| 55 | %{_libdir}/R/library/%{packname}/Code | |
| 56 | %{_libdir}/R/library/%{packname}/extdata | |
| 57 | %{_libdir}/R/library/%{packname}/testClass.R | |
| 58 | %{_libdir}/R/library/%{packname}/NEWS | |
| 59 | %doc %{_libdir}/R/library/%{packname}/doc | |
| 60 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 61 | %doc %{_libdir}/R/library/%{packname}/html |