R-affyPLM.spec

   1 %define         packname        affyPLM
   2
   3 Summary:        Methods for fitting probe-level models
   4 Name:           R-%{packname}
   5 Version:        1.38.0
   6 Release:        3
   7 License:        LGPL v2+
   8 Group:          Applications/Engineering
   9 Source0:        http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  bffb6a94e493311a4cb0f9cc53b696e0
  11 Patch0:         bogus-deps.patch
  12 URL:            http://bioconductor.org/packages/release/bioc/html/affyPLM.html
  13 BuildRequires:  R
  14 BuildRequires:  R-Biobase
  15 BuildRequires:  R-BiocGenerics
  16 BuildRequires:  R-Biostrings-devel
  17 BuildRequires:  R-affy
  18 BuildRequires:  R-preprocessCore-devel
  19 BuildRequires:  R-gcrma
  20 BuildRequires:  texlive-latex
  21 Requires:       R
  22 Requires:       R-Biobase
  23 Requires:       R-BiocGenerics
  24 Requires:       R-Biostrings
  25 Requires:       R-affy
  26 Requires:       R-preprocessCore
  27 Suggests:       R-gcrma
  28 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  29
  30 %description
  31 A package that extends and improves the functionality of the base affy
  32 package. Routines that make heavy use of compiled code for speed.
  33 Central focus is on implementation of methods for fitting probe-level
  34 models and tools using these models. PLM based quality assessment
  35 tools.
  36
  37 %prep
  38 %setup -q -c -n %{packname}
  39 %patch0 -p1
  40
  41 %build
  42
  43 %install
  44 rm -rf $RPM_BUILD_ROOT
  45 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  46
  47 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  48
  49 %clean
  50 rm -rf $RPM_BUILD_ROOT
  51
  52 %files
  53 %defattr(644,root,root,755)
  54 %dir %{_libdir}/R/library/%{packname}
  55 %doc %{_libdir}/R/library/%{packname}/doc
  56 %doc %{_libdir}/R/library/%{packname}/html
  57 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  58 %doc %{_libdir}/R/library/%{packname}/CITATION
  59 %{_libdir}/R/library/%{packname}/INDEX
  60 %{_libdir}/R/library/%{packname}/NAMESPACE
  61 %{_libdir}/R/library/%{packname}/Meta
  62 %{_libdir}/R/library/%{packname}/R
  63 %{_libdir}/R/library/%{packname}/help
  64 %dir %{_libdir}/R/library/%{packname}/libs
  65 %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/affyPLM.so