1 %define packname affyPLM
3 Summary: Methods for fitting probe-level models
8 Group: Applications/Engineering
9 Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
10 # Source0-md5: 95793fc13d81edf7db5e11dd49348302
11 Patch0: bogus-deps.patch
12 URL: http://bioconductor.org/packages/release/bioc/html/%{packname}.html
14 BuildRequires: R-Biobase
15 BuildRequires: R-BiocGenerics
17 BuildRequires: R-preprocessCore-devel
18 BuildRequires: R-gcrma
19 BuildRequires: texlive-latex
22 Requires: R-BiocGenerics
24 Requires: R-preprocessCore
26 BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
29 A package that extends and improves the functionality of the base affy
30 package. Routines that make heavy use of compiled code for speed.
31 Central focus is on implementation of methods for fitting probe-level
32 models and tools using these models. PLM based quality assessment
36 %setup -q -c -n %{packname}
42 rm -rf $RPM_BUILD_ROOT
43 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
45 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
48 rm -rf $RPM_BUILD_ROOT
51 %defattr(644,root,root,755)
52 %dir %{_libdir}/R/library/%{packname}
53 %doc %{_libdir}/R/library/%{packname}/doc
54 %doc %{_libdir}/R/library/%{packname}/html
55 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
56 %doc %{_libdir}/R/library/%{packname}/CITATION
57 %{_libdir}/R/library/%{packname}/INDEX
58 %{_libdir}/R/library/%{packname}/NAMESPACE
59 %{_libdir}/R/library/%{packname}/Meta
60 %{_libdir}/R/library/%{packname}/R
61 %{_libdir}/R/library/%{packname}/help
62 %dir %{_libdir}/R/library/%{packname}/libs
63 %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/affyPLM.so