projects / packages / R-Rsamtools.git / blame
| Commit | Line | Data |
|---|---|---|
| 93cd0b93 JR |
1 | %define packname Rsamtools |
| 2 | ||
| 3 | Summary: Binary alignment (BAM), variant call (BCF), or tabix file import | |
| 4 | Name: R-%{packname} | |
| 5 | Version: 1.12.2 | |
| 6 | Release: 1 | |
| 7 | License: Artistic 2.0 | |
| 8 | Group: Applications/Math | |
| 9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| 10 | # Source0-md5: 4ff6113fe8b925cf7586e1331da1ec23 | |
| 11 | Patch0: bogus-deps.patch | |
| 12 | URL: http://www.bioconductor.org/packages/2.12/bioc/html/Rsamtools.html | |
| 13 | BuildRequires: R | |
| 14 | BuildRequires: R-IRanges-devel >= 1.15.35 | |
| 15 | BuildRequires: R-GenomicRanges >= 1.11.38 | |
| 16 | BuildRequires: R-Biostrings-devel >= 2.25.6 | |
| 17 | BuildRequires: texlive-latex | |
| 18 | Requires: R | |
| 19 | Requires: R-IRanges >= 1.17.33 | |
| 20 | Requires: R-GenomicRanges >= 1.11.38 | |
| 21 | Requires: R-Biostrings >= 2.25.6 | |
| 22 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 23 | ||
| 24 | %description | |
| 25 | This package provides an interface to the 'samtools', 'bcftools', | |
| 26 | and 'tabix' utilities (see 'LICENCE') for manipulating SAM (Sequence | |
| 27 | Alignment / Map), binary variant call (BCF) and compressed indexed | |
| 28 | tab-delimited (tabix) files. | |
| 29 | ||
| 30 | %package devel | |
| 31 | Summary: Development files for %{name} | |
| 32 | Group: Development/Libraries | |
| 33 | Requires: %{name} = %{version}-%{release} | |
| 34 | ||
| 35 | %description devel | |
| 36 | The %{name}-devel package contains libraries and header files for | |
| 37 | developing applications that use %{name}. | |
| 38 | ||
| 39 | %prep | |
| 40 | %setup -q -c -n %{packname} | |
| 41 | %patch0 -p1 | |
| 42 | ||
| 43 | %build | |
| 44 | # circular dep on R-Rsamtools | |
| 45 | #{_bindir}/R CMD build %{packname} | |
| 46 | ||
| 47 | %install | |
| 48 | rm -rf $RPM_BUILD_ROOT | |
| 49 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 50 | ||
| 51 | %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname} | |
| 52 | ||
| 53 | %clean | |
| 54 | rm -rf $RPM_BUILD_ROOT | |
| 55 | ||
| 56 | %files | |
| 57 | %defattr(644,root,root,755) | |
| 58 | %dir %{_libdir}/R/library/%{packname}/ | |
| 59 | %doc %{_libdir}/R/library/%{packname}/doc/ | |
| 60 | %doc %{_libdir}/R/library/%{packname}/html/ | |
| 61 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 62 | %doc %{_libdir}/R/library/%{packname}/LICENSE | |
| 63 | %doc %{_libdir}/R/library/%{packname}/NEWS | |
| 64 | %{_libdir}/R/library/%{packname}/INDEX | |
| 65 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 66 | %{_libdir}/R/library/%{packname}/Meta/ | |
| 67 | %{_libdir}/R/library/%{packname}/R/ | |
| 68 | %{_libdir}/R/library/%{packname}/extdata/ | |
| 69 | %{_libdir}/R/library/%{packname}/help/ | |
| 70 | %{_libdir}/R/library/%{packname}/scripts/ | |
| 71 | %{_libdir}/R/library/%{packname}/unitTests/ | |
| 72 | %{_libdir}/R/library/%{packname}/libs/ | |
| 73 | ||
| 74 | %files devel | |
| 75 | %defattr(644,root,root,755) | |
| 76 | %{_libdir}/R/library/%{packname}/include | |
| 77 | %{_libdir}/R/library/%{packname}/usretc | |
| 78 | %{_libdir}/R/library/%{packname}/usrlib |