# TODO:
# - add more contrib packages
# - separate contrib packages to other specs
# - (?) separate recomended packages to other specs (i'm not sure...)
#
# Conditional build:
# _without_gnome        - without GNOME support
#
Summary:	A language for data analysis and graphics
Summary(pl):	Język do analizy danych oraz grafiki
Name:		R
Version:	1.9.1
Release:	2
License:	Mixed (distributable), mostly GPL
Group:		Development/Languages
# CRAN master site: ftp://cran.r-project.org/pub/R/src/
Source0:	ftp://stat.ethz.ch/R-CRAN/src/base/%{name}-%{version}.tgz
# Source0-md5:	c8201425506e5c077ef1936e19ea2f51
Source1:	ftp://stat.ethz.ch/R-CRAN/src/contrib/KernSmooth_2.22-13.tar.gz
# Source1-md5:	15f5ab6094ea848f02b5109f40055128
Source2:	ftp://stat.ethz.ch/R-CRAN/src/contrib/VR_7.2-4.tar.gz
# Source2-md5:	15882d679f7704597194ab4be40e1a62
Source3:	ftp://stat.ethz.ch/R-CRAN/src/contrib/acepack_1.3-2.1.tar.gz
# Source3-md5:	eb75cab587664b58df4a14c65f450b62
Source4:	ftp://stat.ethz.ch/R-CRAN/src/contrib/boot_1.2-17.tar.gz
# Source4-md5:	88a0bc20efe532f30b0606b99394a3f4
Source5:	ftp://stat.ethz.ch/R-CRAN/src/contrib/bootstrap_1.0-12.tar.gz
# Source5-md5:	6860c7d62ab95756267be774bcf60578
Source6:	ftp://stat.ethz.ch/R-CRAN/src/contrib/cluster_1.9.6.tar.gz
# Source6-md5:	6baba1d66491f6c4fab70d9128df2ccd
Source7:	ftp://stat.ethz.ch/R-CRAN/src/contrib/date_1.2-18.tar.gz
# Source7-md5:	8bb9d6bc5cb0b06e250be6f478cf4c2a
Source8:	ftp://stat.ethz.ch/R-CRAN/src/contrib/e1071_1.4-1.tar.gz
# Source8-md5:	806fc46915d14640e6d01cfa590422e5
Source9:	ftp://stat.ethz.ch/R-CRAN/src/contrib/foreign_0.6-11.tar.gz
# Source9-md5:	6ebc52bc959d27eff06e50b83818bf77
Source10:	ftp://stat.ethz.ch/R-CRAN/src/contrib/fracdiff_1.1-1.tar.gz
# Source10-md5:	e1f624b063789f21c74d85ebaeda60fa
Source11:	ftp://stat.ethz.ch/R-CRAN/src/contrib/gee_4.13-10.tar.gz
# Source11-md5:	7f32a7f7b022dd366d27482a3561d2a6
Source12:	ftp://stat.ethz.ch/R-CRAN/src/contrib/lattice_0.9-16.tar.gz
# Source12-md5:	c98c91ccea8880c79d30aab4e2cca63b
Source13:	ftp://stat.ethz.ch/R-CRAN/src/contrib/leaps_2.7.tar.gz
# Source13-md5:	551d8cd9a53d2eee7c13108577910a44
Source14:	ftp://stat.ethz.ch/R-CRAN/src/contrib/mgcv_1.0-9.tar.gz
# Source14-md5:	ba1585b777c886444d0470c8f831f983
Source15:	ftp://stat.ethz.ch/R-CRAN/src/contrib/mlbench_1.0-0.tar.gz
# Source15-md5:	101108689bd005ef96641a8c33f17698
Source16:	ftp://stat.ethz.ch/R-CRAN/src/contrib/nlme_3.1-50.tar.gz
# Source16-md5:	6d210f59cb96fda0e3b9644e6085da5a
Source17:	ftp://stat.ethz.ch/R-CRAN/src/contrib/oz_1.0-9.tar.gz
# Source17-md5:	0eae69fafcabbe14dff81ff00ef3e4fa
Source18:	ftp://stat.ethz.ch/R-CRAN/src/contrib/polynom_1.1-15.tar.gz
# Source18-md5:	bc17210955f5a49834531ba1bdc1b0e9
Source19:	ftp://stat.ethz.ch/R-CRAN/src/contrib/princurve_1.1-6.tar.gz
# Source19-md5:	8c36f2fef3265890f8393dac6d89fdc5
Source20:	ftp://stat.ethz.ch/R-CRAN/src/contrib/quadprog_1.4-7.tar.gz
# Source20-md5:	d93eb133e72e89de717c9db9d5f28d66
Source21:	ftp://stat.ethz.ch/R-CRAN/src/contrib/rpart_3.1-17.tar.gz
# Source21-md5:	378fb531cac466b6abb774da00846e43
Source22:	ftp://stat.ethz.ch/R-CRAN/src/contrib/survival_2.13-1.tar.gz
# Source22-md5:	cae71a003c742e42675dbdd9b9da371f
Source23:	ftp://stat.ethz.ch/R-CRAN/src/contrib/xgobi_1.2-12.tar.gz
# Source23-md5:	3edae689c69c12ef71df1ee269c1b1b8
Source26:	%{name}.desktop
URL:		http://www.r-project.org/
BuildRequires:	XFree86-devel
BuildRequires:	autoconf
BuildRequires:	automake
BuildRequires:	blas-devel
BuildRequires:	gcc-c++
BuildRequires:	gcc-g77
BuildRequires:	libjpeg-devel >= 6b
BuildRequires:	libpng-devel >= 1.0.5
BuildRequires:	libstdc++-devel
BuildRequires:	libtool
BuildRequires:	libxml-devel
BuildRequires:	perl-base >= 1:5.6
BuildRequires:	readline-devel
BuildRequires:	tetex-latex
BuildRequires:	tetex-dvips
BuildRequires:	tetex-pdftex
BuildRequires:	zip
BuildRequires:	zlib >= 1.1.3
#BuildRequires:	lpr
%{!?_without_gnome:BuildRequires:	gnome-libs-devel}
%{!?_without_gnome:BuildRequires:	ORBit-devel}
%{!?_without_gnome:BuildRequires:	libglade-gnome-devel}
Provides:	R-base
Provides:	R-contrib
BuildRoot:	%{tmpdir}/%{name}-%{version}-root-%(id -u -n)

%description
A system for statistical computation and graphics. R consists of a
language plus a run-time environment with graphics, a debugger, access
to certain system functions, and the ability to run programs stored in
script files.

The design of R has been heavily influenced by two existing languages:
Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
resulting language is very similar in appearance to S, the underlying
implementation and semantics are derived from Scheme.

%description -l pl
System do obliczeń statystycznych i grafiki. R składa się z języka
oraz środowiska uruchomieniowego z grafiką, debuggerem, dostępem do
niektórych funkcji systemowych oraz możliwością uruchamiania programów
zapisanych w skryptach.

Język R był zainspirowany dwoma istniejącymi językami: S (Beckera,
Chambersa i Wilksa) oraz Scheme (Sussmana). R jest podobny do S, ale
implementacja i semantyka wywodzi się ze Scheme.

%package base
Summary:	The R base distribution
Summary(pl):	Podstawowa dystrybucja R
License:	GPL v2 / LGPL
Group:		Development/Languages
Requires(post):	textutils
Requires(post):	perl
Provides:	R-ctest R-eda R-lqs R-methods R-modreg R-mva R-nls R-splines
Provides:	R-stepfun R-tcltk R-tools R-ts R-grid

%description base
R is a language and run-time environment for carrying out interactive
statistical data analysis. It is not entirely dissimilar to the S
language developed at AT&T Bell Laboratories (and now Lucent
Technologies). Indeed, S users will find the environment quite
familiar and a good deal of S software will run without change under
R.

%description base -l pl
R jest językiem i środowiskiem uruchomieniowym do interaktywnej
analizy danych statystycznych. R nie jest całkowicie zgodny z językiem
S opracowanym w AT&T Bell Laboratiories (a teraz Lucent Technologies),
mimo to użytkownicy S zauważą zbliżone środowisko, a duża część
oprogramowania w S będzie działała bez zmian w R.

%package recommended
Summary:	Recommended contributed packages for the R language
Summary(pl):	Zalecane dodatkowe pakiety do języka R
Group:		Development/Languages
Provides:	R-KernSmooth R-VR R-boot R-cluster R-foreign
Provides:	R-lattice R-mgcv R-nlme	R-rpart R-survival
License:	GPL, free or free for non-commercial use
URL:		http://www.ci.tuwien.ac.at/R/
Requires(post,postun):	R-base
Requires(post,postun):	textutils
Requires(post,postun):	perl
Requires:	R-base = %{version}-%{release}
Obsoletes:	R-survival4 R-MASS R-clus R-class R-nnet R-spatial

%description recommended
Packages which extend the capabilities of the R base distribution and
are distributed on the Comprehensive R Archive Network (CRAN).

%description recommended -l pl
Pakiety rozszerzające możliwości podstawowej dystrybucji języka R,
dystrubuowane w archiwum CRAN (Comprehensive R Archive Network).

%package contrib
Summary:	Contributed packages for the R language
Summary(pl):	Dodatkowe pakiety do języka R
License:	Mixed
Group:		Development/Languages
URL:		http://www.ci.tuwien.ac.at/R/
Requires(post,postun):	R-base
Requires(post,postun):	textutils
Requires(post,postun):	perl
Requires:	R-base = %{version}-%{release}
Requires:	R-VR
Provides:	R-acepack R-bootstrap R-date R-e1071 R-fracdiff R-gee
Provides:	R-leaps R-oz R-polynom R-princurve R-quadprog
Provides:	R-xgobi
Obsoletes:	R-principal.curve

%description contrib
Packages which extend the capabilities of the R base distribution and
are distributed on the Comprehensive R Archive Network (CRAN).

%description contrib -l pl
Pakiety rozszerzające możliwości podstawowej dystrybucji języka R,
dystrubuowane w archiwum CRAN (Comprehensive R Archive Network).

%package mlbench
Summary:	Machine learning benchmarks
Summary(pl):	Testy wydajności uczenia maszyny
Group:		Development/Languages
License:	GPL
URL:		http://www.ics.uci.edu/~mlearn/MLRepository.html
Requires(post,postun):	R-base
Requires(post,postun):	textutils
Requires(post,postun):	perl
Requires:	R-base = %{version}-%{release}

%description mlbench
R package which contains a collection of real-world datasets and
functions for creating artificial datasets that work as benchmarks for
machine learning methods.

%description mlbench -l pl
Ten podpakiet R zawiera zestaw rzeczywistych danych i funkcji do
tworzenia sztucznych danych służących jako test wydajności metod
uczenia maszyny.

%prep
%setup -q -c -n R-cran -T -b 1
%setup -q -c -n R-cran -T -D -b 2
%setup -q -c -n R-cran -T -D -b 3
%setup -q -c -n R-cran -T -D -b 4
%setup -q -c -n R-cran -T -D -b 5
%setup -q -c -n R-cran -T -D -b 6
%setup -q -c -n R-cran -T -D -b 7
%setup -q -c -n R-cran -T -D -b 8
%setup -q -c -n R-cran -T -D -b 9
%setup -q -c -n R-cran -T -D -b 10
%setup -q -c -n R-cran -T -D -b 11
%setup -q -c -n R-cran -T -D -b 12
%setup -q -c -n R-cran -T -D -b 13
%setup -q -c -n R-cran -T -D -b 14
%setup -q -c -n R-cran -T -D -b 15
%setup -q -c -n R-cran -T -D -b 16
%setup -q -c -n R-cran -T -D -b 17
%setup -q -c -n R-cran -T -D -b 18
%setup -q -c -n R-cran -T -D -b 19
%setup -q -c -n R-cran -T -D -b 20
%setup -q -c -n R-cran -T -D -b 21
%setup -q -c -n R-cran -T -D -b 22
%setup -q -c -n R-cran -T -D -b 23
%setup -q
#%setup -q -T -D -a 14

# These files have the path for PERL hard-coded as /usr/local/bin/perl
# We need to remove them to avoid dependency problems
rm -f ./doc/keyword-test.orig ./etc/undoc/R-funs.orig ./etc/undoc/extrExamp.orig

%build
%{__aclocal}
%{__autoconf}
cp -f /usr/share/automake/config.* .
%configure \
	%{!?_without_gnome:--with-gnome} \
	%{?_without_gnome:--without-gnome} \
	--without-tcltk \
	--enable-R-shlib

%{__make}
%{__make} help
%{__make} html
%{__make} clean

# Install contrib packages
#
R_HOME=`pwd`;export R_HOME
PERL5LIB=`pwd`/share/perl;export PERL5LIB
cd ../R-cran
for pkg in `ls`
do
${R_HOME}/bin/INSTALL ${pkg}
done
cd ${R_HOME}

#Remove old template files.
#
for oldinfile in `find . -name '*.in' -print`
do
	mv ${oldinfile} ${oldinfile}.old
#	rm ${oldinfile}
done

# Gather documentation from contrib packages in one directory
# Assume that anything not in one of the standard directories is
# documentation, and copy it.
#
mkdir ${R_HOME}/contrib
cd ${RPM_BUILD_DIR}/R-cran
for pkg in `ls`; do
        if [ -d ${pkg} ]; then
		mkdir ${R_HOME}/${pkg}
                for docfile in `ls ${pkg}`; do
                        case $docfile in
                                INDEX) ;;
                                TITLE) ;;
                                R) ;;
                                man) ;;
                                src) ;;
                                src-c) ;;
                                data) ;;
                                *) cp -R -P ${pkg}/${docfile} ${R_HOME};;
                        esac
                done
        fi
done
cd ${R_HOME}

%install
rm -rf $RPM_BUILD_ROOT
install -d $RPM_BUILD_ROOT{%{_bindir},%{_mandir}/man1,%{_libdir}/R,%{_includedir},%{_desktopdir}}

install %{SOURCE26} $RPM_BUILD_ROOT%{_desktopdir}

cp doc/R.1 $RPM_BUILD_ROOT%{_mandir}/man1/
sed "s,`pwd`,%{_libdir}/R,g" < bin/R > $RPM_BUILD_ROOT%{_bindir}/R


cp -R AUTHORS afm bin doc etc library modules share \
	$RPM_BUILD_ROOT%{_libdir}/R

find $RPM_BUILD_ROOT%{_libdir}/R -name 'Makefile*' -exec rm -f {} \;
rm -rf $RPM_BUILD_ROOT%{_libdir}/R/etc/*.old

mv $RPM_BUILD_ROOT%{_libdir}/R/bin/libR*.so $RPM_BUILD_ROOT%{_libdir}

cp -R include $RPM_BUILD_ROOT%{_includedir}/R
ln -sf %{_includedir}/R $RPM_BUILD_ROOT%{_libdir}/R/include

%clean
rm -rf $RPM_BUILD_ROOT

%pre base
if [ -d %{_libdir}/R/include -a ! -L %{_libdir}/R/include ]; then
	mv %{_libdir}/R/include %{_includedir}/R
	ln -sf %{_includedir}/R %{_libdir}/R/include
fi

%post base
(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
 R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
/sbin/ldconfig

%postun	base	-p /sbin/ldconfig

#%preun base
## These files are not owned by any package, so we have to remove them
## but only if this is the last version of R-base on the system.
##
#if [ "$1" = 0 ];
#then
#	rm -f %{_libdir}/R/doc/html/search/index.txt
#	rm -f %{_libdir}/R/doc/html/packages.html
#fi

%post contrib
(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
 R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)

%postun contrib
if [ -f ../bin/Rcmd ];then
(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
 R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
fi

%post recommended
(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
 R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)

%postun recommended
if [ -f ../bin/Rcmd ];then
(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
 R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
fi

%post mlbench
(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
 R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)

%postun mlbench
if [ -f ../bin/Rcmd ];then
(cd %{_libdir}/R/library; umask 022; cat */CONTENTS > ../doc/html/search/index.txt
 R_HOME=%{_libdir}/R ../bin/Rcmd perl ../share/perl/build-help.pl --htmllist)
fi

%files base
%defattr(644,root,root,755)
%{_mandir}/man1/R.1*
%attr(755,root,root) %{_bindir}/R
%dir %{_libdir}/R
%{_libdir}/R/afm
%attr(755,root,root) %{_libdir}/R/bin
%attr(755,root,root) %{_libdir}/libR*.so
%{_libdir}/R/etc
%{_libdir}/R/include
%{_includedir}/R
%{_libdir}/R/share
%{_libdir}/R/AUTHORS
%dir %{_libdir}/R/library
%{_libdir}/R/library/*.css
%{_libdir}/R/library/base
%{_libdir}/R/library/ctest
%{_libdir}/R/library/eda
%{_libdir}/R/library/grid
%{_libdir}/R/library/graphics
%{_libdir}/R/library/lqs
%{_libdir}/R/library/methods
%{_libdir}/R/library/mle
%{_libdir}/R/library/modreg
%{_libdir}/R/library/mva
%{_libdir}/R/library/nls
%{_libdir}/R/library/splines
%{_libdir}/R/library/stats
%{_libdir}/R/library/stats4
%{_libdir}/R/library/stepfun
%{_libdir}/R/library/tcltk
%{_libdir}/R/library/tools
%{_libdir}/R/library/ts
%{_libdir}/R/library/utils
%{_libdir}/R/modules
%doc BUGS COPYRIGHTS FAQ NEWS README RESOURCES THANKS Y2K
# %{_libdir}/R/doc %except %{_libdir}/R/doc/html/{packages.html,search/index.txt}
%dir %{_libdir}/R/doc
%{_libdir}/R/doc/[KRm]*
%dir %{_libdir}/R/doc/html
%{_libdir}/R/doc/html/*.css
%{_libdir}/R/doc/html/[Ra-lr-u]*.html
%{_libdir}/R/doc/html/packages-head.html
%{_libdir}/R/doc/html/*.jpg
%dir %{_libdir}/R/doc/html/search
%{_libdir}/R/doc/html/search/[A-Z]*
%ghost %{_libdir}/R/doc/html/search/index.txt
%ghost %{_libdir}/R/doc/html/packages.html
%{_desktopdir}/*

%files recommended
%defattr(644,root,root,755)
%{_libdir}/R/library/MASS
%{_libdir}/R/library/class
%{_libdir}/R/library/nnet
%{_libdir}/R/library/spatial
%doc VR
%{_libdir}/R/library/KernSmooth
%doc KernSmooth
%{_libdir}/R/library/boot
%doc boot
%{_libdir}/R/library/cluster
%doc cluster
%{_libdir}/R/library/foreign
%doc foreign
%{_libdir}/R/library/lattice
%doc lattice
%{_libdir}/R/library/mgcv
%doc mgcv
%{_libdir}/R/library/nlme
%doc nlme
%{_libdir}/R/library/rpart
%doc rpart
%{_libdir}/R/library/survival
%doc survival

%files contrib
%defattr(644,root,root,755)
%{_libdir}/R/library/acepack
%doc acepack
%{_libdir}/R/library/bootstrap
%doc bootstrap
%{_libdir}/R/library/date
%doc date
%{_libdir}/R/library/e1071
%doc e1071
%{_libdir}/R/library/fracdiff
%doc fracdiff
%{_libdir}/R/library/gee
%doc gee
%{_libdir}/R/library/leaps
%doc leaps
%{_libdir}/R/library/oz
%doc oz
%{_libdir}/R/library/polynom
%doc polynom
%{_libdir}/R/library/princurve
%doc princurve
%{_libdir}/R/library/quadprog
%doc quadprog
%{_libdir}/R/library/xgobi
%doc xgobi

%files mlbench
%defattr(644,root,root,755)
%{_libdir}/R/library/mlbench
%doc mlbench