%define packname rtracklayer Summary: R interface to genome browsers and their annotation tracks Name: R-%{packname} Version: 1.22.0 Release: 2 License: Artistic 2.0 Group: Applications/Engineering Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz # Source0-md5: 1dad994b4779769e935902e9c8384959 Patch0: bogus-deps.patch URL: http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html BuildRequires: R BuildRequires: R-cran-XML BuildRequires: R-cran-RCurl BuildRequires: R-GenomicRanges >= 1.11.12 BuildRequires: R-BSgenome BuildRequires: R-Rsamtools-devel >= 1.7.3 BuildRequires: texlive-latex Requires: R Requires: R-GenomicRanges >= 1.11.12 Requires: R-BSgenome Requires: R-Rsamtools >= 1.7.3 Requires: R-cran-XML Requires: R-cran-RCurl BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) %description Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport. %prep %setup -q -c -n %{packname} %patch0 -p1 %build %install rm -rf $RPM_BUILD_ROOT install -d $RPM_BUILD_ROOT%{_libdir}/R/library %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname} %clean rm -rf $RPM_BUILD_ROOT %files %defattr(644,root,root,755) %doc %{_libdir}/R/library/%{packname}/DESCRIPTION %doc %{_libdir}/R/library/%{packname}/CITATION %doc %{_libdir}/R/library/%{packname}/NEWS %doc %{_libdir}/R/library/%{packname}/doc %doc %{_libdir}/R/library/%{packname}/html %doc %{_libdir}/R/library/%{packname}/notes %dir %{_libdir}/R/library/%{packname} %{_libdir}/R/library/%{packname}/Meta %{_libdir}/R/library/%{packname}/NAMESPACE %{_libdir}/R/library/%{packname}/INDEX %{_libdir}/R/library/%{packname}/R %{_libdir}/R/library/%{packname}/help %{_libdir}/R/library/%{packname}/data %{_libdir}/R/library/%{packname}/demo %{_libdir}/R/library/%{packname}/tests %{_libdir}/R/library/%{packname}/unitTests %{_libdir}/R/library/%{packname}/scripts %{_libdir}/R/library/%{packname}/extdata %dir %{_libdir}/R/library/%{packname}/libs %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/%{packname}.so