R-rtracklayer.spec

   1 %define         packname        rtracklayer
   2
   3 Summary:        R interface to genome browsers and their annotation tracks
   4 Name:           R-%{packname}
   5 Version:        1.22.0
   6 Release:        1
   7 License:        Artistic 2.0
   8 Group:          Applications/Engineering
   9 Source0:        http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  1dad994b4779769e935902e9c8384959
  11 Patch0:         bogus-deps.patch
  12 URL:            http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html
  13 BuildRequires:  R
  14 BuildRequires:  R-GenomicRanges >= 1.11.12
  15 BuildRequires:  R-BSgenome
  16 BuildRequires:  R-Rsamtools-devel >= 1.7.3
  17 BuildRequires:  texlive-latex
  18 Requires:       R
  19 Requires:       R-GenomicRanges >= 1.11.12
  20 Requires:       R-BSgenome
  21 Requires:       R-Rsamtools >= 1.7.3
  22 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  23
  24 %description
  25 Extensible framework for interacting with multiple genome browsers
  26 (currently UCSC built-in) and manipulating annotation tracks in
  27 various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig
  28 and 2bit built-in). The user may export/import tracks to/from
  29 the supported browsers, as well as query and modify the browser
  30 state, such as the current viewport.
  31
  32 %prep
  33 %setup -q -c -n %{packname}
  34 %patch0 -p1
  35
  36 %build
  37
  38 %install
  39 rm -rf $RPM_BUILD_ROOT
  40 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  41
  42 %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
  43
  44 %clean
  45 rm -rf $RPM_BUILD_ROOT
  46
  47 %files
  48 %defattr(644,root,root,755)
  49 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  50 %doc %{_libdir}/R/library/%{packname}/CITATION
  51 %doc %{_libdir}/R/library/%{packname}/NEWS
  52 %doc %{_libdir}/R/library/%{packname}/doc
  53 %doc %{_libdir}/R/library/%{packname}/html
  54 %doc %{_libdir}/R/library/%{packname}/notes
  55 %dir %{_libdir}/R/library/%{packname}
  56 %{_libdir}/R/library/%{packname}/Meta
  57 %{_libdir}/R/library/%{packname}/NAMESPACE
  58 %{_libdir}/R/library/%{packname}/INDEX
  59 %{_libdir}/R/library/%{packname}/R
  60 %{_libdir}/R/library/%{packname}/help
  61 %{_libdir}/R/library/%{packname}/data
  62 %{_libdir}/R/library/%{packname}/demo
  63 %{_libdir}/R/library/%{packname}/tests
  64 %{_libdir}/R/library/%{packname}/unitTests
  65 %{_libdir}/R/library/%{packname}/scripts
  66 %{_libdir}/R/library/%{packname}/extdata
  67 %dir %{_libdir}/R/library/%{packname}/libs
  68 %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/%{packname}.so