R-rtracklayer.spec

   1 %define         packname        rtracklayer
   2
   3 Summary:        R interface to genome browsers and their annotation tracks
   4 Name:           R-%{packname}
   5 Version:        1.22.0
   6 Release:        2
   7 License:        Artistic 2.0
   8 Group:          Applications/Engineering
   9 Source0:        http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  1dad994b4779769e935902e9c8384959
  11 Patch0:         bogus-deps.patch
  12 URL:            http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html
  13 BuildRequires:  R
  14 BuildRequires:  R-cran-XML
  15 BuildRequires:  R-cran-RCurl
  16 BuildRequires:  R-GenomicRanges >= 1.11.12
  17 BuildRequires:  R-BSgenome
  18 BuildRequires:  R-Rsamtools-devel >= 1.7.3
  19 BuildRequires:  texlive-latex
  20 Requires:       R
  21 Requires:       R-GenomicRanges >= 1.11.12
  22 Requires:       R-BSgenome
  23 Requires:       R-Rsamtools >= 1.7.3
  24 Requires:       R-cran-XML
  25 Requires:       R-cran-RCurl
  26 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  27
  28 %description
  29 Extensible framework for interacting with multiple genome browsers
  30 (currently UCSC built-in) and manipulating annotation tracks in
  31 various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig
  32 and 2bit built-in). The user may export/import tracks to/from
  33 the supported browsers, as well as query and modify the browser
  34 state, such as the current viewport.
  35
  36 %prep
  37 %setup -q -c -n %{packname}
  38 %patch0 -p1
  39
  40 %build
  41
  42 %install
  43 rm -rf $RPM_BUILD_ROOT
  44 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  45
  46 %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
  47
  48 %clean
  49 rm -rf $RPM_BUILD_ROOT
  50
  51 %files
  52 %defattr(644,root,root,755)
  53 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  54 %doc %{_libdir}/R/library/%{packname}/CITATION
  55 %doc %{_libdir}/R/library/%{packname}/NEWS
  56 %doc %{_libdir}/R/library/%{packname}/doc
  57 %doc %{_libdir}/R/library/%{packname}/html
  58 %doc %{_libdir}/R/library/%{packname}/notes
  59 %dir %{_libdir}/R/library/%{packname}
  60 %{_libdir}/R/library/%{packname}/Meta
  61 %{_libdir}/R/library/%{packname}/NAMESPACE
  62 %{_libdir}/R/library/%{packname}/INDEX
  63 %{_libdir}/R/library/%{packname}/R
  64 %{_libdir}/R/library/%{packname}/help
  65 %{_libdir}/R/library/%{packname}/data
  66 %{_libdir}/R/library/%{packname}/demo
  67 %{_libdir}/R/library/%{packname}/tests
  68 %{_libdir}/R/library/%{packname}/unitTests
  69 %{_libdir}/R/library/%{packname}/scripts
  70 %{_libdir}/R/library/%{packname}/extdata
  71 %dir %{_libdir}/R/library/%{packname}/libs
  72 %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/%{packname}.so