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27c0f5b4 JR |
1 | %define packname rtracklayer |
2 | ||
3 | Summary: R interface to genome browsers and their annotation tracks | |
4 | Name: R-%{packname} | |
dedeb3e4 | 5 | Version: 1.22.0 |
474bb72f | 6 | Release: 2 |
27c0f5b4 JR |
7 | License: Artistic 2.0 |
8 | Group: Applications/Engineering | |
9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
dedeb3e4 | 10 | # Source0-md5: 1dad994b4779769e935902e9c8384959 |
27c0f5b4 | 11 | Patch0: bogus-deps.patch |
dedeb3e4 | 12 | URL: http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html |
27c0f5b4 | 13 | BuildRequires: R |
474bb72f JR |
14 | BuildRequires: R-cran-XML |
15 | BuildRequires: R-cran-RCurl | |
27c0f5b4 JR |
16 | BuildRequires: R-GenomicRanges >= 1.11.12 |
17 | BuildRequires: R-BSgenome | |
18 | BuildRequires: R-Rsamtools-devel >= 1.7.3 | |
19 | BuildRequires: texlive-latex | |
20 | Requires: R | |
21 | Requires: R-GenomicRanges >= 1.11.12 | |
22 | Requires: R-BSgenome | |
23 | Requires: R-Rsamtools >= 1.7.3 | |
474bb72f JR |
24 | Requires: R-cran-XML |
25 | Requires: R-cran-RCurl | |
27c0f5b4 JR |
26 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) |
27 | ||
28 | %description | |
29 | Extensible framework for interacting with multiple genome browsers | |
30 | (currently UCSC built-in) and manipulating annotation tracks in | |
31 | various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig | |
32 | and 2bit built-in). The user may export/import tracks to/from | |
33 | the supported browsers, as well as query and modify the browser | |
34 | state, such as the current viewport. | |
35 | ||
36 | %prep | |
37 | %setup -q -c -n %{packname} | |
38 | %patch0 -p1 | |
39 | ||
40 | %build | |
41 | ||
42 | %install | |
43 | rm -rf $RPM_BUILD_ROOT | |
44 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
45 | ||
46 | %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname} | |
47 | ||
48 | %clean | |
49 | rm -rf $RPM_BUILD_ROOT | |
50 | ||
51 | %files | |
52 | %defattr(644,root,root,755) | |
53 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
54 | %doc %{_libdir}/R/library/%{packname}/CITATION | |
55 | %doc %{_libdir}/R/library/%{packname}/NEWS | |
56 | %doc %{_libdir}/R/library/%{packname}/doc | |
57 | %doc %{_libdir}/R/library/%{packname}/html | |
58 | %doc %{_libdir}/R/library/%{packname}/notes | |
59 | %dir %{_libdir}/R/library/%{packname} | |
60 | %{_libdir}/R/library/%{packname}/Meta | |
61 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
62 | %{_libdir}/R/library/%{packname}/INDEX | |
63 | %{_libdir}/R/library/%{packname}/R | |
64 | %{_libdir}/R/library/%{packname}/help | |
65 | %{_libdir}/R/library/%{packname}/data | |
66 | %{_libdir}/R/library/%{packname}/demo | |
67 | %{_libdir}/R/library/%{packname}/tests | |
68 | %{_libdir}/R/library/%{packname}/unitTests | |
69 | %{_libdir}/R/library/%{packname}/scripts | |
70 | %{_libdir}/R/library/%{packname}/extdata | |
71 | %dir %{_libdir}/R/library/%{packname}/libs | |
72 | %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/%{packname}.so |