projects / packages / R-rtracklayer.git / blame
| Commit | Line | Data |
|---|---|---|
| 27c0f5b4 JR |
1 | %define packname rtracklayer |
| 2 | ||
| 3 | Summary: R interface to genome browsers and their annotation tracks | |
| 4 | Name: R-%{packname} | |
| dedeb3e4 | 5 | Version: 1.22.0 |
| 474bb72f | 6 | Release: 2 |
| 27c0f5b4 JR |
7 | License: Artistic 2.0 |
| 8 | Group: Applications/Engineering | |
| 9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| dedeb3e4 | 10 | # Source0-md5: 1dad994b4779769e935902e9c8384959 |
| 27c0f5b4 | 11 | Patch0: bogus-deps.patch |
| dedeb3e4 | 12 | URL: http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html |
| 27c0f5b4 | 13 | BuildRequires: R |
| 474bb72f JR |
14 | BuildRequires: R-cran-XML |
| 15 | BuildRequires: R-cran-RCurl | |
| 27c0f5b4 JR |
16 | BuildRequires: R-GenomicRanges >= 1.11.12 |
| 17 | BuildRequires: R-BSgenome | |
| 18 | BuildRequires: R-Rsamtools-devel >= 1.7.3 | |
| 19 | BuildRequires: texlive-latex | |
| 20 | Requires: R | |
| 21 | Requires: R-GenomicRanges >= 1.11.12 | |
| 22 | Requires: R-BSgenome | |
| 23 | Requires: R-Rsamtools >= 1.7.3 | |
| 474bb72f JR |
24 | Requires: R-cran-XML |
| 25 | Requires: R-cran-RCurl | |
| 27c0f5b4 JR |
26 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) |
| 27 | ||
| 28 | %description | |
| 29 | Extensible framework for interacting with multiple genome browsers | |
| 30 | (currently UCSC built-in) and manipulating annotation tracks in | |
| 31 | various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig | |
| 32 | and 2bit built-in). The user may export/import tracks to/from | |
| 33 | the supported browsers, as well as query and modify the browser | |
| 34 | state, such as the current viewport. | |
| 35 | ||
| 36 | %prep | |
| 37 | %setup -q -c -n %{packname} | |
| 38 | %patch0 -p1 | |
| 39 | ||
| 40 | %build | |
| 41 | ||
| 42 | %install | |
| 43 | rm -rf $RPM_BUILD_ROOT | |
| 44 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 45 | ||
| 46 | %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname} | |
| 47 | ||
| 48 | %clean | |
| 49 | rm -rf $RPM_BUILD_ROOT | |
| 50 | ||
| 51 | %files | |
| 52 | %defattr(644,root,root,755) | |
| 53 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 54 | %doc %{_libdir}/R/library/%{packname}/CITATION | |
| 55 | %doc %{_libdir}/R/library/%{packname}/NEWS | |
| 56 | %doc %{_libdir}/R/library/%{packname}/doc | |
| 57 | %doc %{_libdir}/R/library/%{packname}/html | |
| 58 | %doc %{_libdir}/R/library/%{packname}/notes | |
| 59 | %dir %{_libdir}/R/library/%{packname} | |
| 60 | %{_libdir}/R/library/%{packname}/Meta | |
| 61 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 62 | %{_libdir}/R/library/%{packname}/INDEX | |
| 63 | %{_libdir}/R/library/%{packname}/R | |
| 64 | %{_libdir}/R/library/%{packname}/help | |
| 65 | %{_libdir}/R/library/%{packname}/data | |
| 66 | %{_libdir}/R/library/%{packname}/demo | |
| 67 | %{_libdir}/R/library/%{packname}/tests | |
| 68 | %{_libdir}/R/library/%{packname}/unitTests | |
| 69 | %{_libdir}/R/library/%{packname}/scripts | |
| 70 | %{_libdir}/R/library/%{packname}/extdata | |
| 71 | %dir %{_libdir}/R/library/%{packname}/libs | |
| 72 | %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/%{packname}.so |