- new auto/th/R-multtest-2.14.0-1
authorJan Rękorajski <baggins@pld-linux.org>
Thu, 18 Oct 2012 11:58:15 +0000 (13:58 +0200)
committerJan Rękorajski <baggins@pld-linux.org>
Thu, 18 Oct 2012 11:58:15 +0000 (13:58 +0200)
R-multtest.spec [new file with mode: 0644]

diff --git a/R-multtest.spec b/R-multtest.spec
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+%define                packname        multtest
+
+Summary:       Multiple hypothesis testing library from Bioconductor
+Name:          R-%{packname}
+Version:       2.14.0
+Release:       1
+License:       LGPL v2+
+Group:         X11/Applications
+Source0:       http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: 2cbfe12636fc0865e8fc3fe56272fa5f
+URL:           http://www.bioconductor.org/packages/release/bioc/html/multtest.html
+BuildRequires: R-Biobase
+BuildRequires: R
+BuildRequires: texlive-latex
+Requires:      R-Biobase
+Requires:      R
+BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Non-parametric bootstrap and permutation resampling-based multiple
+testing procedures for controlling the family-wise error rate (FWER),
+generalized family-wise error rate (gFWER), tail probability of the
+proportion of false positives (TPPFP), and false discovery rate (FDR).
+Single-step and step-wise methods are implemented. Tests based on a
+variety of t- and F-statistics (including t-statistics based on
+regression parameters from linear and survival models) are included.
+Results are reported in terms of adjusted p-values, confindence
+regions and test statistic cutoffs. The procedures are directly
+applicable to identifying differentially expressed genes in DNA
+microarray experiments.
+
+This Library is a part of the Bioconductor (bioconductor.org) proejct.
+
+%prep
+%setup -c -q -n %{packname}
+
+%{__sed} -i -e 's/\r$//'  %{packname}/inst/doc/multtest.bib
+%{__sed} -i -e 's/\r$//'  %{packname}/inst/doc/MTP.tex
+#%{__sed} -i -e 's/\r$//'  %{packname}/inst/doc/Rplots.ps
+
+%build
+R CMD build %{packname}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/html
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/libs/
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/data
+%{_libdir}/R/library/%{packname}/otherDocs
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