R-multtest.spec

   1 %define         packname        multtest
   2
   3 Summary:        Multiple hypothesis testing library from Bioconductor
   4 Name:           R-%{packname}
   5 Version:        2.14.0
   6 Release:        1
   7 License:        LGPL v2+
   8 Group:          X11/Applications
   9 Source0:        http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  2cbfe12636fc0865e8fc3fe56272fa5f
  11 URL:            http://www.bioconductor.org/packages/release/bioc/html/multtest.html
  12 BuildRequires:  R-Biobase
  13 BuildRequires:  R
  14 BuildRequires:  texlive-latex
  15 Requires:       R-Biobase
  16 Requires:       R
  17 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  18
  19 %description
  20 Non-parametric bootstrap and permutation resampling-based multiple
  21 testing procedures for controlling the family-wise error rate (FWER),
  22 generalized family-wise error rate (gFWER), tail probability of the
  23 proportion of false positives (TPPFP), and false discovery rate (FDR).
  24 Single-step and step-wise methods are implemented. Tests based on a
  25 variety of t- and F-statistics (including t-statistics based on
  26 regression parameters from linear and survival models) are included.
  27 Results are reported in terms of adjusted p-values, confindence
  28 regions and test statistic cutoffs. The procedures are directly
  29 applicable to identifying differentially expressed genes in DNA
  30 microarray experiments.
  31
  32 This Library is a part of the Bioconductor (bioconductor.org) proejct.
  33
  34 %prep
  35 %setup -c -q -n %{packname}
  36
  37 %{__sed} -i -e 's/\r$//'  %{packname}/inst/doc/multtest.bib
  38 %{__sed} -i -e 's/\r$//'  %{packname}/inst/doc/MTP.tex
  39 #%{__sed} -i -e 's/\r$//'  %{packname}/inst/doc/Rplots.ps
  40
  41 %build
  42 R CMD build %{packname}
  43
  44 %install
  45 rm -rf $RPM_BUILD_ROOT
  46 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  47
  48 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  49
  50 %clean
  51 rm -rf $RPM_BUILD_ROOT
  52
  53 %files
  54 %defattr(644,root,root,755)
  55 %dir %{_libdir}/R/library/%{packname}
  56 %doc %{_libdir}/R/library/%{packname}/doc
  57 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  58 %doc %{_libdir}/R/library/%{packname}/html
  59 %{_libdir}/R/library/%{packname}/INDEX
  60 %{_libdir}/R/library/%{packname}/Meta/
  61 %{_libdir}/R/library/%{packname}/R/
  62 %{_libdir}/R/library/%{packname}/help/
  63 %{_libdir}/R/library/%{packname}/libs/
  64 %{_libdir}/R/library/%{packname}/NAMESPACE
  65 %{_libdir}/R/library/%{packname}/data
  66 %{_libdir}/R/library/%{packname}/otherDocs