projects / packages / R-multtest.git / blame
| Commit | Line | Data |
|---|---|---|
| 4db2d0b3 JR |
1 | %define packname multtest |
| 2 | ||
| 3 | Summary: Multiple hypothesis testing library from Bioconductor | |
| 4 | Name: R-%{packname} | |
| f32eeacd | 5 | Version: 2.18.0 |
| 4db2d0b3 JR |
6 | Release: 1 |
| 7 | License: LGPL v2+ | |
| 8 | Group: X11/Applications | |
| 9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| f32eeacd | 10 | # Source0-md5: 265ed65e1e7b6c1796a5bbb22519fd18 |
| 4db2d0b3 JR |
11 | URL: http://www.bioconductor.org/packages/release/bioc/html/multtest.html |
| 12 | BuildRequires: R-Biobase | |
| 13 | BuildRequires: R | |
| 14 | BuildRequires: texlive-latex | |
| 15 | Requires: R-Biobase | |
| 16 | Requires: R | |
| 17 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 18 | ||
| 19 | %description | |
| 20 | Non-parametric bootstrap and permutation resampling-based multiple | |
| 21 | testing procedures for controlling the family-wise error rate (FWER), | |
| 22 | generalized family-wise error rate (gFWER), tail probability of the | |
| 23 | proportion of false positives (TPPFP), and false discovery rate (FDR). | |
| 24 | Single-step and step-wise methods are implemented. Tests based on a | |
| 25 | variety of t- and F-statistics (including t-statistics based on | |
| 26 | regression parameters from linear and survival models) are included. | |
| 27 | Results are reported in terms of adjusted p-values, confindence | |
| 28 | regions and test statistic cutoffs. The procedures are directly | |
| 29 | applicable to identifying differentially expressed genes in DNA | |
| 30 | microarray experiments. | |
| 31 | ||
| 32 | This Library is a part of the Bioconductor (bioconductor.org) proejct. | |
| 33 | ||
| 34 | %prep | |
| 35 | %setup -c -q -n %{packname} | |
| 36 | ||
| 37 | %{__sed} -i -e 's/\r$//' %{packname}/inst/doc/multtest.bib | |
| 38 | %{__sed} -i -e 's/\r$//' %{packname}/inst/doc/MTP.tex | |
| 39 | #%{__sed} -i -e 's/\r$//' %{packname}/inst/doc/Rplots.ps | |
| 40 | ||
| 41 | %build | |
| 42 | R CMD build %{packname} | |
| 43 | ||
| 44 | %install | |
| 45 | rm -rf $RPM_BUILD_ROOT | |
| 46 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 47 | ||
| 48 | R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 49 | ||
| 50 | %clean | |
| 51 | rm -rf $RPM_BUILD_ROOT | |
| 52 | ||
| 53 | %files | |
| 54 | %defattr(644,root,root,755) | |
| 55 | %dir %{_libdir}/R/library/%{packname} | |
| 56 | %doc %{_libdir}/R/library/%{packname}/doc | |
| 57 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 58 | %doc %{_libdir}/R/library/%{packname}/html | |
| 59 | %{_libdir}/R/library/%{packname}/INDEX | |
| 60 | %{_libdir}/R/library/%{packname}/Meta/ | |
| 61 | %{_libdir}/R/library/%{packname}/R/ | |
| 62 | %{_libdir}/R/library/%{packname}/help/ | |
| 63 | %{_libdir}/R/library/%{packname}/libs/ | |
| 64 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 65 | %{_libdir}/R/library/%{packname}/data | |
| 66 | %{_libdir}/R/library/%{packname}/otherDocs |