- up to 2.18.0
[packages/R-multtest.git] / R-multtest.spec
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1%define packname multtest
2
3Summary: Multiple hypothesis testing library from Bioconductor
4Name: R-%{packname}
f32eeacd 5Version: 2.18.0
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6Release: 1
7License: LGPL v2+
8Group: X11/Applications
9Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
f32eeacd 10# Source0-md5: 265ed65e1e7b6c1796a5bbb22519fd18
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11URL: http://www.bioconductor.org/packages/release/bioc/html/multtest.html
12BuildRequires: R-Biobase
13BuildRequires: R
14BuildRequires: texlive-latex
15Requires: R-Biobase
16Requires: R
17BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
18
19%description
20Non-parametric bootstrap and permutation resampling-based multiple
21testing procedures for controlling the family-wise error rate (FWER),
22generalized family-wise error rate (gFWER), tail probability of the
23proportion of false positives (TPPFP), and false discovery rate (FDR).
24Single-step and step-wise methods are implemented. Tests based on a
25variety of t- and F-statistics (including t-statistics based on
26regression parameters from linear and survival models) are included.
27Results are reported in terms of adjusted p-values, confindence
28regions and test statistic cutoffs. The procedures are directly
29applicable to identifying differentially expressed genes in DNA
30microarray experiments.
31
32This Library is a part of the Bioconductor (bioconductor.org) proejct.
33
34%prep
35%setup -c -q -n %{packname}
36
37%{__sed} -i -e 's/\r$//' %{packname}/inst/doc/multtest.bib
38%{__sed} -i -e 's/\r$//' %{packname}/inst/doc/MTP.tex
39#%{__sed} -i -e 's/\r$//' %{packname}/inst/doc/Rplots.ps
40
41%build
42R CMD build %{packname}
43
44%install
45rm -rf $RPM_BUILD_ROOT
46install -d $RPM_BUILD_ROOT%{_libdir}/R/library
47
48R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
49
50%clean
51rm -rf $RPM_BUILD_ROOT
52
53%files
54%defattr(644,root,root,755)
55%dir %{_libdir}/R/library/%{packname}
56%doc %{_libdir}/R/library/%{packname}/doc
57%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
58%doc %{_libdir}/R/library/%{packname}/html
59%{_libdir}/R/library/%{packname}/INDEX
60%{_libdir}/R/library/%{packname}/Meta/
61%{_libdir}/R/library/%{packname}/R/
62%{_libdir}/R/library/%{packname}/help/
63%{_libdir}/R/library/%{packname}/libs/
64%{_libdir}/R/library/%{packname}/NAMESPACE
65%{_libdir}/R/library/%{packname}/data
66%{_libdir}/R/library/%{packname}/otherDocs
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