R-edgeR.spec

   1 %define         packname        edgeR
   2
   3 Summary:        Empirical analysis of digital gene expression data in R
   4 Name:           R-%{packname}
   5 Version:        3.4.0
   6 Release:        1
   7 License:        LGPL
   8 Group:          Applications/Engineering
   9 Source0:        http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  e683382eb9d098346ed0b7b0f80b1e5d
  11 URL:            http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
  12 BuildRequires:  R-limma
  13 BuildRequires:  R
  14 BuildRequires:  texlive-latex
  15 Requires:       R-limma
  16 Requires:       R
  17 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  18
  19 %description
  20 Differential expression analysis of RNA-seq and digital gene
  21 expression profiles with biological replication. Uses empirical Bayes
  22 estimation and exact tests based on the negative binomial
  23 distribution. Also useful for differential signal analysis with other
  24 types of genome-scale count data.
  25
  26 %prep
  27 %setup -q -c -n %{packname}
  28
  29 %build
  30
  31 %install
  32 rm -rf $RPM_BUILD_ROOT
  33 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  34
  35 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
  36
  37 %clean
  38 rm -rf $RPM_BUILD_ROOT
  39
  40 %files
  41 %defattr(644,root,root,755)
  42 %dir %{_libdir}/R/library/%{packname}/
  43 %doc %{_libdir}/R/library/%{packname}/CITATION
  44 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  45 %doc %{_libdir}/R/library/%{packname}/NEWS.Rd
  46 %doc %{_libdir}/R/library/%{packname}/html
  47 %doc %{_libdir}/R/library/%{packname}/doc
  48 %{_libdir}/R/library/%{packname}/INDEX
  49 %{_libdir}/R/library/%{packname}/Meta/
  50 %{_libdir}/R/library/%{packname}/NAMESPACE
  51 %{_libdir}/R/library/%{packname}/R/
  52 %{_libdir}/R/library/%{packname}/help/
  53 %{_libdir}/R/library/%{packname}/data
  54 %dir %{_libdir}/R/library/%{packname}/libs
  55 %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/edgeR.so