- rebuild with lapack 3.7
[packages/R-edgeR.git] / R-edgeR.spec
1 %define         packname        edgeR
2
3 Summary:        Empirical analysis of digital gene expression data in R
4 Name:           R-%{packname}
5 Version:        3.4.0
6 Release:        2
7 License:        LGPL
8 Group:          Applications/Engineering
9 Source0:        http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
10 # Source0-md5:  e683382eb9d098346ed0b7b0f80b1e5d
11 URL:            http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
12 BuildRequires:  R-limma
13 BuildRequires:  R
14 BuildRequires:  texlive-latex
15 Requires:       R-limma
16 Requires:       R
17 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
18
19 %description
20 Differential expression analysis of RNA-seq and digital gene
21 expression profiles with biological replication. Uses empirical Bayes
22 estimation and exact tests based on the negative binomial
23 distribution. Also useful for differential signal analysis with other
24 types of genome-scale count data.
25
26 %prep
27 %setup -q -c -n %{packname}
28
29 %build
30
31 %install
32 rm -rf $RPM_BUILD_ROOT
33 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
34
35 R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
36
37 %clean
38 rm -rf $RPM_BUILD_ROOT
39
40 %files
41 %defattr(644,root,root,755)
42 %dir %{_libdir}/R/library/%{packname}/
43 %doc %{_libdir}/R/library/%{packname}/CITATION
44 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
45 %doc %{_libdir}/R/library/%{packname}/NEWS.Rd
46 %doc %{_libdir}/R/library/%{packname}/html
47 %doc %{_libdir}/R/library/%{packname}/doc
48 %{_libdir}/R/library/%{packname}/INDEX
49 %{_libdir}/R/library/%{packname}/Meta/
50 %{_libdir}/R/library/%{packname}/NAMESPACE
51 %{_libdir}/R/library/%{packname}/R/
52 %{_libdir}/R/library/%{packname}/help/
53 %{_libdir}/R/library/%{packname}/data
54 %dir %{_libdir}/R/library/%{packname}/libs
55 %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/edgeR.so
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