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76d63a1c JR |
1 | %define packname edgeR |
2 | ||
3 | Summary: Empirical analysis of digital gene expression data in R | |
4 | Name: R-%{packname} | |
1fd04ef4 | 5 | Version: 3.4.0 |
e799b563 | 6 | Release: 2 |
76d63a1c JR |
7 | License: LGPL |
8 | Group: Applications/Engineering | |
9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
1fd04ef4 | 10 | # Source0-md5: e683382eb9d098346ed0b7b0f80b1e5d |
76d63a1c JR |
11 | URL: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html |
12 | BuildRequires: R-limma | |
13 | BuildRequires: R | |
14 | BuildRequires: texlive-latex | |
15 | Requires: R-limma | |
16 | Requires: R | |
17 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
18 | ||
19 | %description | |
20 | Differential expression analysis of RNA-seq and digital gene | |
21 | expression profiles with biological replication. Uses empirical Bayes | |
22 | estimation and exact tests based on the negative binomial | |
23 | distribution. Also useful for differential signal analysis with other | |
24 | types of genome-scale count data. | |
25 | ||
26 | %prep | |
27 | %setup -q -c -n %{packname} | |
28 | ||
29 | %build | |
30 | ||
31 | %install | |
32 | rm -rf $RPM_BUILD_ROOT | |
33 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
34 | ||
35 | R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
36 | ||
37 | %clean | |
38 | rm -rf $RPM_BUILD_ROOT | |
39 | ||
40 | %files | |
41 | %defattr(644,root,root,755) | |
42 | %dir %{_libdir}/R/library/%{packname}/ | |
43 | %doc %{_libdir}/R/library/%{packname}/CITATION | |
44 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
45 | %doc %{_libdir}/R/library/%{packname}/NEWS.Rd | |
46 | %doc %{_libdir}/R/library/%{packname}/html | |
47 | %doc %{_libdir}/R/library/%{packname}/doc | |
48 | %{_libdir}/R/library/%{packname}/INDEX | |
49 | %{_libdir}/R/library/%{packname}/Meta/ | |
50 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
51 | %{_libdir}/R/library/%{packname}/R/ | |
52 | %{_libdir}/R/library/%{packname}/help/ | |
53 | %{_libdir}/R/library/%{packname}/data | |
54 | %dir %{_libdir}/R/library/%{packname}/libs | |
55 | %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/edgeR.so |