projects / packages / R-edgeR.git / blame
| Commit | Line | Data |
|---|---|---|
| 76d63a1c JR |
1 | %define packname edgeR |
| 2 | ||
| 3 | Summary: Empirical analysis of digital gene expression data in R | |
| 4 | Name: R-%{packname} | |
| 1fd04ef4 | 5 | Version: 3.4.0 |
| 76d63a1c JR |
6 | Release: 1 |
| 7 | License: LGPL | |
| 8 | Group: Applications/Engineering | |
| 9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| 1fd04ef4 | 10 | # Source0-md5: e683382eb9d098346ed0b7b0f80b1e5d |
| 76d63a1c JR |
11 | URL: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html |
| 12 | BuildRequires: R-limma | |
| 13 | BuildRequires: R | |
| 14 | BuildRequires: texlive-latex | |
| 15 | Requires: R-limma | |
| 16 | Requires: R | |
| 17 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 18 | ||
| 19 | %description | |
| 20 | Differential expression analysis of RNA-seq and digital gene | |
| 21 | expression profiles with biological replication. Uses empirical Bayes | |
| 22 | estimation and exact tests based on the negative binomial | |
| 23 | distribution. Also useful for differential signal analysis with other | |
| 24 | types of genome-scale count data. | |
| 25 | ||
| 26 | %prep | |
| 27 | %setup -q -c -n %{packname} | |
| 28 | ||
| 29 | %build | |
| 30 | ||
| 31 | %install | |
| 32 | rm -rf $RPM_BUILD_ROOT | |
| 33 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 34 | ||
| 35 | R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 36 | ||
| 37 | %clean | |
| 38 | rm -rf $RPM_BUILD_ROOT | |
| 39 | ||
| 40 | %files | |
| 41 | %defattr(644,root,root,755) | |
| 42 | %dir %{_libdir}/R/library/%{packname}/ | |
| 43 | %doc %{_libdir}/R/library/%{packname}/CITATION | |
| 44 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 45 | %doc %{_libdir}/R/library/%{packname}/NEWS.Rd | |
| 46 | %doc %{_libdir}/R/library/%{packname}/html | |
| 47 | %doc %{_libdir}/R/library/%{packname}/doc | |
| 48 | %{_libdir}/R/library/%{packname}/INDEX | |
| 49 | %{_libdir}/R/library/%{packname}/Meta/ | |
| 50 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 51 | %{_libdir}/R/library/%{packname}/R/ | |
| 52 | %{_libdir}/R/library/%{packname}/help/ | |
| 53 | %{_libdir}/R/library/%{packname}/data | |
| 54 | %dir %{_libdir}/R/library/%{packname}/libs | |
| 55 | %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/edgeR.so |