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89efce48 JR |
1 | %define packname biovizBase |
2 | ||
3 | Summary: Basic graphic utilities for visualization of genomic data | |
4 | Name: R-%{packname} | |
5 | Version: 1.10.4 | |
6 | Release: 1 | |
7 | License: Artistic 2.0 | |
8 | Group: X11/Applications | |
9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
10 | # Source0-md5: c9f2652887977e5283bcbb6b9e30b14a | |
11 | URL: http://www.bioconductor.org/packages/release/bioc/html/biovizBase.html | |
12 | BuildRequires: R | |
13 | BuildRequires: R-cran-scales | |
14 | BuildRequires: R-cran-Hmisc | |
15 | BuildRequires: R-cran-RColorBrewer | |
16 | BuildRequires: R-cran-dichromat | |
17 | BuildRequires: R-GenomicRanges | |
18 | BuildRequires: R-Biostrings | |
19 | BuildRequires: R-Rsamtools | |
20 | BuildRequires: R-GenomicFeatures | |
21 | BuildRequires: texlive-latex | |
22 | Requires: R | |
24fb6ce8 JR |
23 | Requires: R-cran-scales |
24 | Requires: R-cran-Hmisc | |
25 | Requires: R-cran-RColorBrewer | |
26 | Requires: R-cran-dichromat | |
89efce48 JR |
27 | Requires: R-GenomicRanges |
28 | Requires: R-Biostrings | |
29 | Requires: R-Rsamtools | |
30 | Requires: R-GenomicFeatures | |
31 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
32 | ||
33 | %description | |
34 | The biovizBase package is designed to provide a set of utilities, | |
35 | color schemes and conventions for genomic data. It serves as the base | |
36 | for various high-level packages for biological data visualization. | |
37 | This saves development effort and encourages consistency. | |
38 | ||
39 | %prep | |
40 | %setup -c -q -n %{packname} | |
41 | ||
42 | %build | |
43 | ||
44 | %install | |
45 | rm -rf $RPM_BUILD_ROOT | |
46 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
47 | ||
48 | %{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
49 | ||
50 | %clean | |
51 | rm -rf $RPM_BUILD_ROOT | |
52 | ||
53 | %files | |
54 | %defattr(644,root,root,755) | |
55 | %dir %{_libdir}/R/library/%{packname}/ | |
56 | %doc %{_libdir}/R/library/%{packname}/doc/ | |
57 | %doc %{_libdir}/R/library/%{packname}/html/ | |
58 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
59 | %doc %{_libdir}/R/library/%{packname}/NEWS | |
60 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
61 | %{_libdir}/R/library/%{packname}/INDEX | |
62 | %{_libdir}/R/library/%{packname}/Meta/ | |
63 | %{_libdir}/R/library/%{packname}/R/ | |
64 | %{_libdir}/R/library/%{packname}/help/ | |
65 | %{_libdir}/R/library/%{packname}/data/ | |
66 | %{_libdir}/R/library/%{packname}/examples/ | |
67 | %{_libdir}/R/library/%{packname}/extdata/ | |
68 | %dir %{_libdir}/R/library/%{packname}/libs | |
69 | %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/biovizBase.so |