projects / packages / R-biomaRt.git / blame
| Commit | Line | Data |
|---|---|---|
| 719c3884 JR |
1 | %define packname biomaRt |
| 2 | ||
| 3 | Summary: R Interface to BioMart databases | |
| 4 | Name: R-%{packname} | |
| b92e3b28 | 5 | Version: 2.18.0 |
| 719c3884 JR |
6 | Release: 1 |
| 7 | License: Artistic 2.0 | |
| 8 | Group: X11/Applications | |
| 9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| b92e3b28 | 10 | # Source0-md5: 2692dafbad92824a549ed451d5fccabc |
| 719c3884 JR |
11 | URL: http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html |
| 12 | BuildRequires: R-cran-RCurl | |
| 13 | BuildRequires: R-cran-XML | |
| 14 | BuildRequires: R | |
| 15 | BuildRequires: texlive-latex | |
| 16 | Requires: R-cran-RCurl | |
| 17 | Requires: R-cran-XML | |
| 18 | Requires: R | |
| 19 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 20 | ||
| 21 | %description | |
| 22 | In recent years a wealth of biological data has become available in | |
| 23 | public data repositories. Easy access to these valuable data resources | |
| 24 | and firm integration with data analysis is needed for comprehensive | |
| 25 | bioinformatics data analysis. biomaRt provides an interface to a | |
| 26 | growing collection of databases implementing the BioMart software | |
| 27 | suite (http://www.biomart.org). The package enables retrieval of large | |
| 28 | amounts of data in a uniform way without the need to know the | |
| 29 | underlying database schemas or write complex SQL queries. Examples of | |
| 30 | BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, | |
| 31 | Wormbase and dbSNP mapped to Ensembl. These major databases give | |
| 32 | biomaRt users direct access to a diverse set of data and enable a wide | |
| 33 | range of powerful online queries from gene annotation to database | |
| 34 | mining. | |
| 35 | ||
| 36 | %prep | |
| 37 | %setup -c -q -n %{packname} | |
| 38 | ||
| 39 | %build | |
| 40 | ||
| 41 | %install | |
| 42 | rm -rf $RPM_BUILD_ROOT | |
| 43 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 44 | ||
| 45 | %{_bindir}/R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 46 | ||
| 47 | %clean | |
| 48 | rm -rf $RPM_BUILD_ROOT | |
| 49 | ||
| 50 | %files | |
| 51 | %defattr(644,root,root,755) | |
| 52 | %dir %{_libdir}/R/library/%{packname}/ | |
| 53 | %doc %{_libdir}/R/library/%{packname}/doc/ | |
| 54 | %doc %{_libdir}/R/library/%{packname}/html/ | |
| 55 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 56 | %doc %{_libdir}/R/library/%{packname}/CITATION | |
| 57 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 58 | %{_libdir}/R/library/%{packname}/INDEX | |
| 59 | %{_libdir}/R/library/%{packname}/Meta/ | |
| 60 | %{_libdir}/R/library/%{packname}/R/ | |
| 61 | %{_libdir}/R/library/%{packname}/help/ | |
| 62 | %{_libdir}/R/library/%{packname}/scripts/ |