projects / packages / R-affyPLM.git / blame
| Commit | Line | Data |
|---|---|---|
| 82e87ece JR |
1 | %define packname affyPLM |
| 2 | ||
| 3 | Summary: Methods for fitting probe-level models | |
| 4 | Name: R-%{packname} | |
| 163d538d | 5 | Version: 1.38.0 |
| 9c4edec5 | 6 | Release: 4 |
| 82e87ece JR |
7 | License: LGPL v2+ |
| 8 | Group: Applications/Engineering | |
| 9 | Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| 163d538d | 10 | # Source0-md5: bffb6a94e493311a4cb0f9cc53b696e0 |
| 82e87ece | 11 | Patch0: bogus-deps.patch |
| 163d538d | 12 | URL: http://bioconductor.org/packages/release/bioc/html/affyPLM.html |
| 82e87ece JR |
13 | BuildRequires: R |
| 14 | BuildRequires: R-Biobase | |
| 15 | BuildRequires: R-BiocGenerics | |
| 0b26d19e | 16 | BuildRequires: R-Biostrings-devel |
| 82e87ece JR |
17 | BuildRequires: R-affy |
| 18 | BuildRequires: R-preprocessCore-devel | |
| 19 | BuildRequires: R-gcrma | |
| 20 | BuildRequires: texlive-latex | |
| 21 | Requires: R | |
| 22 | Requires: R-Biobase | |
| 23 | Requires: R-BiocGenerics | |
| 0b26d19e | 24 | Requires: R-Biostrings |
| 82e87ece JR |
25 | Requires: R-affy |
| 26 | Requires: R-preprocessCore | |
| 27 | Suggests: R-gcrma | |
| 28 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 29 | ||
| 30 | %description | |
| 31 | A package that extends and improves the functionality of the base affy | |
| 32 | package. Routines that make heavy use of compiled code for speed. | |
| 33 | Central focus is on implementation of methods for fitting probe-level | |
| 34 | models and tools using these models. PLM based quality assessment | |
| 35 | tools. | |
| 36 | ||
| 37 | %prep | |
| 38 | %setup -q -c -n %{packname} | |
| 39 | %patch0 -p1 | |
| 40 | ||
| 41 | %build | |
| 42 | ||
| 43 | %install | |
| 44 | rm -rf $RPM_BUILD_ROOT | |
| 45 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 46 | ||
| 47 | R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 48 | ||
| 49 | %clean | |
| 50 | rm -rf $RPM_BUILD_ROOT | |
| 51 | ||
| 52 | %files | |
| 53 | %defattr(644,root,root,755) | |
| 54 | %dir %{_libdir}/R/library/%{packname} | |
| 55 | %doc %{_libdir}/R/library/%{packname}/doc | |
| 56 | %doc %{_libdir}/R/library/%{packname}/html | |
| 57 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 58 | %doc %{_libdir}/R/library/%{packname}/CITATION | |
| 59 | %{_libdir}/R/library/%{packname}/INDEX | |
| 60 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 61 | %{_libdir}/R/library/%{packname}/Meta | |
| 62 | %{_libdir}/R/library/%{packname}/R | |
| 63 | %{_libdir}/R/library/%{packname}/help | |
| 64 | %dir %{_libdir}/R/library/%{packname}/libs | |
| 65 | %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/affyPLM.so |