From 5d0c5cf1e15fca804dfe5ce2e5d8b6c19b1dc11a Mon Sep 17 00:00:00 2001 From: =?utf8?q?Jan=20R=C4=99korajski?= Date: Tue, 26 Nov 2013 14:38:08 +0100 Subject: [PATCH 1/1] - initial revision --- R-affxparser.spec | 56 +++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 56 insertions(+) create mode 100644 R-affxparser.spec diff --git a/R-affxparser.spec b/R-affxparser.spec new file mode 100644 index 0000000..7af6117 --- /dev/null +++ b/R-affxparser.spec @@ -0,0 +1,56 @@ +%define packname affxparser + +Summary: Affymetrix File Parsing SDK +Name: R-%{packname} +Version: 1.34.0 +Release: 1 +License: LGPL v2+ +Group: Applications/Engineering +Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz +# Source0-md5: dbcd64c4d496799d932af88b54eb3881 +URL: http://bioconductor.org/packages/release/bioc/html/affxparser.html +BuildRequires: R +BuildRequires: texlive-latex +Requires: R +BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) + +%description +Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). +It provides methods for fast and memory efficient parsing of +Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and +binary-based files are supported. Currently, there are methods for +reading chip definition file (CDF) and a cell intensity file (CEL). +These files can be read either in full or in part. For example, +probe signals from a few probesets can be extracted very quickly +from a set of CEL files into a convenient list structure. + +%prep +%setup -q -c -n %{packname} + +%build + +%install +rm -rf $RPM_BUILD_ROOT +install -d $RPM_BUILD_ROOT%{_libdir}/R/library + +R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library + +%clean +rm -rf $RPM_BUILD_ROOT + +%files +%defattr(644,root,root,755) +%dir %{_libdir}/R/library/%{packname} +%doc %{_libdir}/R/library/%{packname}/html +%doc %{_libdir}/R/library/%{packname}/DESCRIPTION +%doc %{_libdir}/R/library/%{packname}/NEWS +%{_libdir}/R/library/%{packname}/INDEX +%{_libdir}/R/library/%{packname}/NAMESPACE +%{_libdir}/R/library/%{packname}/Meta +%{_libdir}/R/library/%{packname}/R +%{_libdir}/R/library/%{packname}/help +%{_libdir}/R/library/%{packname}/libs +%{_libdir}/R/library/%{packname}/extras +%{_libdir}/R/library/%{packname}/info +%{_libdir}/R/library/%{packname}/testscripts + -- 2.43.0